HL_9HA4_040

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

9HA4|1|A|G|2308, 9HA4|1|A|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA4_040 not in the Motif Atlas

Homologous match to HL_9DFE_053

Geometric discrepancy: 0.5204

The information below is about HL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA4|1|A|G|2303
9HA4|1|A|G|2304
9HA4|1|A|U|2305
9HA4|1|A|C|2306
9HA4|1|A|G|2307
9HA4|1|A|G|2308
9HA4|1|A|A|2309
9HA4|1|A|C|2310
9HA4|1|A|A|2311
9HA4|1|A|U|2312
9HA4|1|A|C|2313

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL5