HL_9HA5_012

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9HA5|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA5_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1385

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9HA5|1|A|G|410
9HA5|1|A|G|411
9HA5|1|A|A|412
9HA5|1|A|C|413
9HA5|1|A|C|414
9HA5|1|A|A|415
9HA5|1|A|U|416
9HA5|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains