3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9HA6_008 not in the Motif Atlas
Homologous match to HL_5J7L_141
Geometric discrepancy: 0.1375
The information below is about HL_5J7L_141
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37369.2
Basepair signature
cWW-tSH-F-F-F
Number of instances in this motif group
9

Unit IDs

9HA6|1|A|C|246
9HA6|1|A|G|247
9HA6|1|A|G|248
9HA6|1|A|C|249
9HA6|1|A|G|250
9HA6|1|A|A|251
9HA6|1|A|G|252

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL35
Chain L
Large ribosomal subunit protein uL15
Chain X
Large ribosomal subunit protein bL28

Coloring options:


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