9HA6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9HA6_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_9HA6_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_9HA6_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_9HA6_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_9HA6_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_9HA6_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_9HA6_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_9HA6_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_9HA6_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_9HA6_011 | 1/A/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_9HA6_012 | 1/A/410:417 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_9HA6_013 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_9HA6_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_9HA6_016 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_9HA6_017 | 1/A/611:617 | No text annotation | geometric HL_2ZZM_002 NA | |
| HL_9HA6_018 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_9HA6_019 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_9HA6_021 | 1/A/744:753 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_9HA6_022 | 1/A/779:785 | UNCG | geometric HL_6JQ6_004 NA | |
| HL_9HA6_023 | 1/A/826:831 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_9HA6_024 | 1/A/955:962 | GNRA | homologous HL_7A0S_026 HL_34789.1 | |
| HL_9HA6_025 | 1/A/978:985 | No text annotation | homologous HL_9DFE_026 HL_47171.1 | |
| HL_9HA6_028 | 1/A/1222:1227 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_9HA6_029 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_9HA6_030 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_9HA6_031 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_9HA6_032 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_9HA6_033 | 1/A/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_9HA6_034 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_9HA6_036 | 1/A/1565:1568 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_9HA6_037 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_9HA6_038 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_9HA6_039 | 1/A/1691:1696 | UNCG | homologous HL_5J7L_175 NA | |
| HL_9HA6_040 | 1/A/1727:1733 | No text annotation | homologous HL_5J7L_214 NA | |
| HL_9HA6_041 | 1/A/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_9HA6_042 | 1/A/1777:1787 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_9HA6_043 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_9HA6_046 | 1/A/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_9HA6_047 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_9HA6_049 | 1/A/2209:2215 | No text annotation | homologous HL_4WF9_048 HL_81964.1 | |
| HL_9HA6_050 | 1/A/2248:2256 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_9HA6_051 | 1/A/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_9HA6_052 | 1/A/2303:2313 | No text annotation | homologous HL_9DFE_053 NA | |
| HL_9HA6_053 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_9DFE_054 HL_52651.1 | |
| HL_9HA6_054 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_9HA6_055 | 1/A/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_9HA6_056 | 1/A/2404:2413 | No text annotation | homologous HL_7A0S_058 HL_51853.1 | |
| HL_9HA6_057 | 1/A/2471:2479 | No text annotation | homologous HL_9DFE_058 HL_52011.1 | |
| HL_9HA6_058 | 1/A/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_9HA6_059 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_9HA6_060 | 1/A/2594:2599 | GNRA | homologous HL_7A0S_062 HL_34789.1 | |
| HL_9HA6_061 | 1/A/2658:2663 | GNRA | homologous HL_9DFE_062 HL_34789.1 | |
| HL_9HA6_062 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_9HA6_063 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_9HA6_065 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_9HA6_066 | 1/A/2856:2861 | GNRA | homologous HL_7A0S_068 HL_34789.1 | |
| HL_9HA6_067 | 1/B/38:44 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_9HA6_068 | 1/B/86:90 | Mini UNCG | geometric HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9HA6_004 | No text annotation | ||
| HL_9HA6_015 | No text annotation | ||
| HL_9HA6_020 | GNRA wlth tandem sheared | ||
| HL_9HA6_026 | No text annotation | ||
| HL_9HA6_027 | No text annotation | ||
| HL_9HA6_035 | UNCG | ||
| HL_9HA6_044 | GNRA variation | ||
| HL_9HA6_045 | No text annotation | ||
| HL_9HA6_048 | No text annotation | ||
| HL_9HA6_064 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9HA6_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_9HA6_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_9HA6_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_9HA6_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_9HA6_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_15011.1 | |
| IL_9HA6_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.1 | |
| IL_9HA6_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_9HA6_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_9HA6_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_9HA6_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_9DFE_012 IL_44923.1 | |
| IL_9HA6_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_9HA6_013 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_9HA6_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_9HA6_015 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.1 | |
| IL_9HA6_016 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_9HA6_017 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_7A0S_016 IL_14190.1 | |
| IL_9HA6_018 | 1/A/702:703, 1/A/728:730 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_9HA6_019 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_9DFE_019 IL_15190.1 | |
| IL_9HA6_020 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_9HA6_021 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_9HA6_022 | 1/A/844:847, 1/A/933:934 | 90 degree turn | geometric IL_5J7L_267 NA | |
| IL_9HA6_023 | 1/A/844:848, 1/A/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_9HA6_024 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 NA | |
| IL_9HA6_025 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_9HA6_026 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_9HA6_027 | 1/A/862:863, 1/A/913:915 | Single bulged G | homologous IL_5J7L_271 NA | |
| IL_9HA6_028 | 1/A/864:868, 1/A/909:912 | C-loop with bulged stacked A's | homologous IL_9DFE_028 IL_16301.1 | |
| IL_9HA6_029 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_9HA6_030 | 1/A/875:879, 1/A/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_9HA6_031 | 1/A/879:881, 1/A/895:898 | Isolated non-canonical cWW pair | geometric IL_4WF9_018 IL_71625.1 | |
| IL_9HA6_032 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_7A0S_032 IL_05642.1 | |
| IL_9HA6_033 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_9HA6_034 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_9HA6_035 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_9HA6_036 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_9HA6_037 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | homologous IL_5J7L_281 NA | |
| IL_9HA6_038 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_4WF9_041 IL_30229.1 | |
| IL_9HA6_039 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_9HA6_040 | 1/A/1043:1052, 1/A/1107:1112 | No text annotation | ||
| IL_9HA6_042 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 | |
| IL_9HA6_043 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_9HA6_044 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_9HA6_045 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_9HA6_046 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_74641.1 | |
| IL_9HA6_047 | 1/A/1319:1323, 1/A/1331:1333 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_9HA6_048 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_9HA6_049 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_9HA6_050 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_9HA6_051 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_9HA6_052 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_9HA6_053 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_9HA6_054 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | homologous IL_5J7L_298 NA | |
| IL_9HA6_055 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_9HA6_056 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_9HA6_057 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_9HA6_058 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_9DFE_061 IL_14190.1 | |
| IL_9HA6_059 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_9HA6_060 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_9HA6_061 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_9HA6_062 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_9HA6_063 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_9HA6_064 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_9HA6_065 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 NA | |
| IL_9HA6_066 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_9HA6_067 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_9HA6_068 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_9HA6_069 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_9HA6_070 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_9HA6_071 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_9HA6_072 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_9HA6_073 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_9HA6_074 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_9HA6_075 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | geometric IL_7A0S_071 IL_24886.1 | |
| IL_9HA6_076 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_9HA6_077 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_9HA6_078 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_9HA6_079 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_97561.1 | |
| IL_9HA6_080 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_4WF9_081 IL_34520.1 | |
| IL_9HA6_081 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.1 | |
| IL_9HA6_082 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_9HA6_086 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_9HA6_087 | 1/A/2297:2299, 1/A/2317:2321 | No text annotation | geometric IL_5J7L_332 NA | |
| IL_9HA6_088 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_9HA6_089 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U | geometric IL_7PMM_002 IL_97561.1 | |
| IL_9HA6_090 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_9HA6_091 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.7 | |
| IL_9HA6_092 | 1/A/2459:2461, 1/A/2489:2493 | No text annotation | homologous IL_9DFE_094 IL_36931.1 | |
| IL_9HA6_093 | 1/A/2466:2470, 1/A/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_9HA6_094 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_9HA6_095 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.1 | |
| IL_9HA6_096 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation | homologous IL_5J7L_341 NA | |
| IL_9HA6_097 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.1 | |
| IL_9HA6_098 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | geometric IL_2QUX_002 IL_14190.1 | |
| IL_9HA6_099 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_9HA6_100 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.5 | |
| IL_9HA6_101 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_9HA6_102 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_9HA6_103 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_9HA6_104 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_9HA6_105 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_9HA6_106 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_9HA6_107 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_78536.1 | |
| IL_9HA6_108 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_9HA6_109 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_9HA6_110 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_9DFE_110 IL_14190.1 | |
| IL_9HA6_111 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_9DFE_111 IL_18472.5 | |
| IL_9HA6_112 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.1 | |
| IL_9HA6_113 | 1/B/34:38, 1/B/44:48 | No text annotation | homologous IL_7A0S_113 IL_58103.12 | |
| IL_9HA6_114 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_9DFE_114 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9HA6_009 | No text annotation | ||
| IL_9HA6_041 | No text annotation | ||
| IL_9HA6_083 | Single stack bend with SAM intercalation | ||
| IL_9HA6_084 | No text annotation | ||
| IL_9HA6_085 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9HA6_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_9HA6_002 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_9HA6_003 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_9HA6_004 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_9HA6_005 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_9HA6_006 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_9DFE_008 J3_69816.1 | |
| J3_9HA6_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9HA6_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9HA6_009 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_9HA6_010 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_9HA6_011 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_9HA6_012 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_9HA6_013 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation | geometric J3_5J7L_045 NA | |
| J3_9HA6_014 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_9HA6_015 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_9HA6_016 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_9HA6_017 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_9HA6_018 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_7A0S_014 NA | |
| J4_9HA6_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_9HA6_002 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_9HA6_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_9HA6_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_9HA6_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_9HA6_006 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_9HA6_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_9HA6_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_9HA6_009 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_9HA6_010 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_9HA6_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_9HA6_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_9HA6_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | ||
| J5_9HA6_004 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_9HA6_005 | 1/A/2057:2064, 1/A/2446:2454, 1/A/2498:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_9HA6_006 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_9HA6_001 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_9HA6_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_9HA6_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_9HA6_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
No problematic loops
Coloring options: