HL_9HA6_009

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9HA6|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1834

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9HA6|1|A|C|305
9HA6|1|A|U|306
9HA6|1|A|G|307
9HA6|1|A|G|308
9HA6|1|A|A|309
9HA6|1|A|A|310
9HA6|1|A|A|311
9HA6|1|A|G|312

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24