HL_9HA6_017

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9HA6|1|A|A|613, 9HA6|1|A|A|614, 9HA6|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_017 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3291

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9HA6|1|A|C|611
9HA6|1|A|G|612
9HA6|1|A|A|613
9HA6|1|A|A|614
9HA6|1|A|U|615
9HA6|1|A|A|616
9HA6|1|A|G|617

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4