HL_9HA6_020

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_020 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.293

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9HA6|1|A|G|712
9HA6|1|A|G|713
9HA6|1|A|U|714
9HA6|1|A|A|715
9HA6|1|A|A|716
9HA6|1|A|C|717
9HA6|1|A|A|718
9HA6|1|A|C|719

Current chains

Chain A

23S ribosomal rRNA

Nearby chains