HL_9HA6_024

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9HA6|1|A|U|958, 9HA6|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_024 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2822

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9HA6|1|A|U|955
9HA6|1|A|G|956
9HA6|1|A|C|957
9HA6|1|A|U|958
9HA6|1|A|A|959
9HA6|1|A|A|960
9HA6|1|A|C|961
9HA6|1|A|G|962

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16