HL_9HA6_025

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_025 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.273

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|978
9HA6|1|A|A|979
9HA6|1|A|A|980
9HA6|1|A|A|981
9HA6|1|A|C|982
9HA6|1|A|A|983
9HA6|1|A|A|984
9HA6|1|A|C|985

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21