HL_9HA6_047

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9HA6|1|A|A|2030, 9HA6|1|A|A|2031, 9HA6|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_047 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1648

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|2027
9HA6|1|A|U|2028
9HA6|1|A|G|2029
9HA6|1|A|A|2030
9HA6|1|A|A|2031
9HA6|1|A|G|2032
9HA6|1|A|A|2033
9HA6|1|A|U|2034
9HA6|1|A|G|2035
9HA6|1|A|C|2036

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

50S ribosomal protein L3

Chain R

Large ribosomal subunit protein bL21