HL_9HA6_053

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_053 not in the Motif Atlas

Homologous match to HL_9DFE_054

Geometric discrepancy: 0.2352

The information below is about HL_9DFE_054

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9HA6|1|A|U|2324
9HA6|1|A|G|2325
9HA6|1|A|C|2326
9HA6|1|A|A|2327
9HA6|1|A|A|2328
9HA6|1|A|U|2329
9HA6|1|A|G|2330
9HA6|1|A|G|2331

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

Large ribosomal subunit protein bL27