HL_9HA6_060

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

9HA6|1|A|U|2596, 9HA6|1|A|G|2597, 9HA6|1|A|A|2598

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_060 not in the Motif Atlas

Homologous match to HL_7A0S_062

Geometric discrepancy: 0.3424

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9HA6|1|A|C|2594
9HA6|1|A|G|2595
9HA6|1|A|U|2596
9HA6|1|A|G|2597
9HA6|1|A|A|2598
9HA6|1|A|G|2599

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2