HL_9HA6_061

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

9HA6|1|A|A|2660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_061 not in the Motif Atlas

Homologous match to HL_9DFE_062

Geometric discrepancy: 0.2976

The information below is about HL_9DFE_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9HA6|1|A|C|2658
9HA6|1|A|G|2659
9HA6|1|A|A|2660
9HA6|1|A|G|2661
9HA6|1|A|A|2662
9HA6|1|A|G|2663

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6