HL_9HA6_062

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_062 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.2585

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9HA6|1|A|U|2701
9HA6|1|A|G|2702
9HA6|1|A|C|2703
9HA6|1|A|C|2704
9HA6|1|A|A|2705
9HA6|1|A|A|2706

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17