HL_9HA6_065

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9HA6|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA6_065 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1519

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9HA6|1|A|G|2819
9HA6|1|A|A|2820
9HA6|1|A|A|2821
9HA6|1|A|G|2822
9HA6|1|A|A|2823
9HA6|1|A|C|2824
9HA6|1|A|G|2825
9HA6|1|A|A|2826
9HA6|1|A|C|2827

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17