HL_9HAI_015

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9HAI|1|A|U|545, 9HAI|1|A|U|546, 9HAI|1|A|A|547, 9HAI|1|A|G|548, 9HAI|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAI_015 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3676

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9HAI|1|A|G|543
9HAI|1|A|C|544
9HAI|1|A|U|545
9HAI|1|A|U|546
9HAI|1|A|A|547
9HAI|1|A|G|548
9HAI|1|A|G|549
9HAI|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21