HL_9HAL_026

3D structure

PDB id

9HAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit d126_(L29)-/(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.49 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9HAL|1|A|A|2030, 9HAL|1|A|A|2031, 9HAL|1|A|G|2032, 9HAL|1|A|U|2034, 9HAL|1|A|G|2035

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAL_026 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.3689

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9HAL|1|A|G|2027
9HAL|1|A|U|2028
9HAL|1|A|G|2029
9HAL|1|A|A|2030
9HAL|1|A|A|2031
9HAL|1|A|G|2032
9HAL|1|A|A|2033
9HAL|1|A|U|2034
9HAL|1|A|G|2035
9HAL|1|A|C|2036

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20