9HAL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9HAL_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_9HAL_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_9HAL_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_9HAL_004 | 1/A/137:142 | No text annotation | ||
| HL_9HAL_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_9HAL_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_9HAL_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_9HAL_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_9HAL_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
| HL_9HAL_010 | 1/A/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.5 | |
| HL_9HAL_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_9HAL_012 | 1/A/382:392 | No text annotation | ||
| HL_9HAL_013 | 1/A/410:417 | No text annotation | homologous HL_9DFE_013 HL_30680.3 | |
| HL_9HAL_014 | 1/A/462:467 | GNRA | homologous HL_7A0S_015 HL_37824.8 | |
| HL_9HAL_015 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_9HAL_016 | 1/A/543:550 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
| HL_9HAL_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | homologous HL_9DFE_016 HL_28252.9 | |
| HL_9HAL_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_9HAL_019 | 1/A/630:634 | No text annotation | ||
| HL_9HAL_020 | 1/A/641:647 | GNRA | homologous HL_4WF9_021 HL_37824.8 | |
| HL_9HAL_021 | 1/A/826:831 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_9HAL_022 | 1/A/955:962 | GNRA | homologous HL_4WF9_027 HL_37824.8 | |
| HL_9HAL_023 | 1/A/978:985 | No text annotation | homologous HL_9DFE_026 HL_42998.2 | |
| HL_9HAL_024 | 1/A/1172:1177 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_9HAL_025 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.8 | |
| HL_9HAL_026 | 1/A/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.3 | |
| HL_9HAL_027 | 1/A/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.8 | |
| HL_9HAL_028 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
| HL_9HAL_029 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.2 | |
| HL_9HAL_030 | 1/A/2796:2799 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_48778.2 | |
| HL_9HAL_031 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9HAL_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_9HAL_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_9DFE_002 IL_31462.7 | |
| IL_9HAL_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_9HAL_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_9HAL_005 | 1/A/183:184, 1/A/212:215 | No text annotation | ||
| IL_9HAL_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_04346.10 | |
| IL_9HAL_007 | 1/A/238:245, 1/A/253:259 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_04346.10 | |
| IL_9HAL_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_9HAL_009 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_9HAL_010 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_9HAL_011 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.2 | |
| IL_9HAL_012 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
| IL_9HAL_013 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_07785.1 | |
| IL_9HAL_014 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_9HAL_015 | 1/A/628:630, 1/A/634:635 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_9HAL_016 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_87907.2 | |
| IL_9HAL_017 | 1/A/674:678, 1/A/799:806 | No text annotation | ||
| IL_9HAL_018 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_9HAL_019 | 1/A/844:847, 1/A/933:934 | 90 degree turn | geometric IL_5J7L_267 IL_90729.1 | |
| IL_9HAL_020 | 1/A/844:848, 1/A/930:934 | No text annotation | geometric IL_5J7L_399 IL_96236.1 | |
| IL_9HAL_021 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_9HAL_022 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_9HAL_023 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.2 | |
| IL_9HAL_024 | 1/A/862:863, 1/A/913:915 | Minor groove platform | homologous IL_7A0S_028 IL_51454.3 | |
| IL_9HAL_025 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_9HAL_026 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_9HAL_027 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_9HAL_028 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_9HAL_029 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_9HAL_030 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | homologous IL_5J7L_281 IL_50715.3 | |
| IL_9HAL_031 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_9HAL_032 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_9HAL_033 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_9HAL_034 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_9HAL_035 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation | homologous IL_9DFE_101 IL_04638.3 | |
| IL_9HAL_036 | 1/A/2651:2658, 1/A/2663:2669 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_9HAL_037 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_9HAL_038 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_9HAL_039 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_9HAL_040 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_9HAL_042 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A | geometric IL_8C3A_031 NA | |
| IL_9HAL_043 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_9HAL_044 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_9HAL_045 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9HAL_041 | Isolated near basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9HAL_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_4WF9_010 J3_60031.2 | |
| J3_9HAL_002 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_9HAL_003 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_9HAL_004 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_9HAL_005 | 1/A/2812:2816, 1/A/2830:2836, 1/A/2882:2888 | No text annotation | ||
| J4_9HAL_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_9HAL_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_9HAL_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_9HAL_004 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_9HAL_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_9HAL_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_9HAL_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
| J6_9HAL_001 | 1/A/45:46, 1/A/179:183, 1/A/215:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_9HAL_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_9HAL_002 | 1/A/817:822, 1/A/835:837, 1/A/942:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
No problematic loops
Coloring options: