9HAL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9HAL_001 | No text annotation | ||
| HL_9HAL_002 | No text annotation | ||
| HL_9HAL_003 | No text annotation | ||
| HL_9HAL_004 | No text annotation | ||
| HL_9HAL_005 | No text annotation | ||
| HL_9HAL_006 | No text annotation | ||
| HL_9HAL_007 | No text annotation | ||
| HL_9HAL_008 | No text annotation | ||
| HL_9HAL_009 | T-loop with 2 stacked bulged bases | ||
| HL_9HAL_010 | No text annotation | ||
| HL_9HAL_011 | T-loop with unstacked turn | ||
| HL_9HAL_012 | No text annotation | ||
| HL_9HAL_013 | No text annotation | ||
| HL_9HAL_014 | GNRA | ||
| HL_9HAL_015 | GNRA | ||
| HL_9HAL_016 | No text annotation | ||
| HL_9HAL_017 | T-loop with 2 stacked bulged bases | ||
| HL_9HAL_018 | No text annotation | ||
| HL_9HAL_019 | No text annotation | ||
| HL_9HAL_020 | GNRA | ||
| HL_9HAL_021 | No text annotation | ||
| HL_9HAL_022 | GNRA | ||
| HL_9HAL_023 | No text annotation | ||
| HL_9HAL_024 | Externally structured | ||
| HL_9HAL_025 | GNRA | ||
| HL_9HAL_026 | No text annotation | ||
| HL_9HAL_027 | GNRA | ||
| HL_9HAL_028 | Ribsomal LSU H95 | ||
| HL_9HAL_029 | No text annotation | ||
| HL_9HAL_030 | Mini UNCG with extended bulge | ||
| HL_9HAL_031 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9HAL_031 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9HAL_001 | Triple sheared with non-canonical cWW | ||
| IL_9HAL_002 | Single bulged A | ||
| IL_9HAL_003 | Minor groove platform | ||
| IL_9HAL_004 | No text annotation | ||
| IL_9HAL_005 | No text annotation | ||
| IL_9HAL_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9HAL_007 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9HAL_008 | No text annotation | ||
| IL_9HAL_009 | No text annotation | ||
| IL_9HAL_010 | No text annotation | ||
| IL_9HAL_011 | No text annotation | ||
| IL_9HAL_012 | Double sheared | ||
| IL_9HAL_013 | Isolated non-canonical cWW pair | ||
| IL_9HAL_014 | AAA cross-strand stack | ||
| IL_9HAL_015 | Single stack bend | ||
| IL_9HAL_016 | Isolated non-canonical cWW pair | ||
| IL_9HAL_017 | No text annotation | ||
| IL_9HAL_018 | Single stack bend | ||
| IL_9HAL_019 | 90 degree turn | ||
| IL_9HAL_020 | No text annotation | ||
| IL_9HAL_021 | Stack outside cWW | ||
| IL_9HAL_022 | Single stack bend | ||
| IL_9HAL_023 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_9HAL_024 | Minor groove platform | ||
| IL_9HAL_025 | Single bulged C | ||
| IL_9HAL_026 | UAA/GAN | ||
| IL_9HAL_027 | SSU/LSU pseudoknot | ||
| IL_9HAL_028 | Single bulged U | ||
| IL_9HAL_029 | Kink-turn related | ||
| IL_9HAL_030 | No text annotation | ||
| IL_9HAL_032 | No text annotation | ||
| IL_9HAL_033 | Kink-turn | ||
| IL_9HAL_034 | Major groove platform | ||
| IL_9HAL_035 | No text annotation | ||
| IL_9HAL_036 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_9HAL_037 | C-loop | ||
| IL_9HAL_038 | UAA/GAN related, with intercalation | ||
| IL_9HAL_039 | Multiple bulged bases | ||
| IL_9HAL_040 | UAA/GAN with extra cWW | ||
| IL_9HAL_041 | Isolated near basepair | ||
| IL_9HAL_042 | Single bulged A | ||
| IL_9HAL_043 | No text annotation | ||
| IL_9HAL_044 | Major groove intercalation | ||
| IL_9HAL_045 | Multiple bulged bases with non-canonical cWW |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J7_9HAL_002 | 1/A/817:822, 1/A/835:837, 1/A/942:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9HAL_001 | No text annotation | ||
| J3_9HAL_002 | No text annotation | ||
| J3_9HAL_003 | No text annotation | ||
| J3_9HAL_004 | No text annotation | ||
| J3_9HAL_005 | No text annotation | ||
| J4_9HAL_001 | No text annotation | ||
| J4_9HAL_002 | No text annotation | ||
| J4_9HAL_003 | No text annotation | ||
| J4_9HAL_004 | No text annotation | ||
| J5_9HAL_001 | No text annotation | ||
| J5_9HAL_002 | No text annotation | ||
| J5_9HAL_003 | No text annotation | ||
| J6_9HAL_001 | No text annotation | ||
| J7_9HAL_001 | No text annotation |
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