HL_9HAM_018

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9HAM|1|A|A|613, 9HAM|1|A|A|614, 9HAM|1|A|U|615

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAM_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.4649

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

9HAM|1|A|C|611
9HAM|1|A|G|612
9HAM|1|A|A|613
9HAM|1|A|A|614
9HAM|1|A|U|615
9HAM|1|A|A|616
9HAM|1|A|G|617

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4