9HAM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9HAM_001 | No text annotation | ||
| HL_9HAM_002 | No text annotation | ||
| HL_9HAM_003 | No text annotation | ||
| HL_9HAM_004 | No text annotation | ||
| HL_9HAM_005 | No text annotation | ||
| HL_9HAM_006 | No text annotation | ||
| HL_9HAM_007 | No text annotation | ||
| HL_9HAM_008 | No text annotation | ||
| HL_9HAM_009 | T-loop with 2 stacked bulged bases | ||
| HL_9HAM_010 | No text annotation | ||
| HL_9HAM_011 | T-loop with unstacked turn | ||
| HL_9HAM_012 | No text annotation | ||
| HL_9HAM_013 | Pseudoknot geometry | ||
| HL_9HAM_014 | GNRA | ||
| HL_9HAM_015 | GNRA | ||
| HL_9HAM_016 | No text annotation | ||
| HL_9HAM_017 | T-loop with 2 stacked bulged bases | ||
| HL_9HAM_018 | No text annotation | ||
| HL_9HAM_019 | No text annotation | ||
| HL_9HAM_020 | GNRA | ||
| HL_9HAM_021 | No text annotation | ||
| HL_9HAM_022 | GNRA | ||
| HL_9HAM_023 | No text annotation | ||
| HL_9HAM_024 | Externally structured | ||
| HL_9HAM_025 | GNRA | ||
| HL_9HAM_026 | T-loop with 2 stacked bulged bases | ||
| HL_9HAM_027 | Pseudoknot geometry with 3' bulge | ||
| HL_9HAM_028 | GNRA | ||
| HL_9HAM_029 | No text annotation | ||
| HL_9HAM_030 | Mini UNCG with extended bulge | ||
| HL_9HAM_031 | No text annotation | ||
| HL_9HAM_032 | UNCG | ||
| HL_9HAM_033 | Mini UNCG | ||
| HL_9HAM_034 | No text annotation | ||
| HL_9HAM_035 | GNRA | ||
| HL_9HAM_036 | No text annotation | ||
| HL_9HAM_037 | No text annotation | ||
| HL_9HAM_038 | No text annotation | ||
| HL_9HAM_039 | GNRA | ||
| HL_9HAM_040 | Ribsomal LSU H95 | ||
| HL_9HAM_041 | No text annotation | ||
| HL_9HAM_042 | No text annotation | ||
| HL_9HAM_043 | No text annotation | ||
| HL_9HAM_044 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9HAM_027 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9HAM_001 | Triple sheared with non-canonical cWW | ||
| IL_9HAM_002 | Single bulged A | ||
| IL_9HAM_003 | Minor groove platform | ||
| IL_9HAM_004 | No text annotation | ||
| IL_9HAM_005 | No text annotation | ||
| IL_9HAM_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9HAM_007 | Single stack bend | ||
| IL_9HAM_008 | No text annotation | ||
| IL_9HAM_009 | No text annotation | ||
| IL_9HAM_010 | No text annotation | ||
| IL_9HAM_011 | No text annotation | ||
| IL_9HAM_012 | No text annotation | ||
| IL_9HAM_013 | Double sheared | ||
| IL_9HAM_014 | Isolated non-canonical cWW pair | ||
| IL_9HAM_015 | AAA cross-strand stack | ||
| IL_9HAM_016 | Single stack bend | ||
| IL_9HAM_017 | Isolated non-canonical cWW pair | ||
| IL_9HAM_018 | No text annotation | ||
| IL_9HAM_019 | 90 degree turn | ||
| IL_9HAM_020 | No text annotation | ||
| IL_9HAM_021 | Stack outside cWW | ||
| IL_9HAM_022 | Single stack bend | ||
| IL_9HAM_023 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_9HAM_024 | Single bulged C | ||
| IL_9HAM_025 | UAA/GAN | ||
| IL_9HAM_026 | SSU/LSU pseudoknot | ||
| IL_9HAM_028 | No text annotation | ||
| IL_9HAM_029 | Isolated cWS basepair | ||
| IL_9HAM_030 | No text annotation | ||
| IL_9HAM_031 | Kink-turn | ||
| IL_9HAM_032 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9HAM_033 | C-loop | ||
| IL_9HAM_034 | UAA/GAN | ||
| IL_9HAM_035 | tSH-tHW-tHS | ||
| IL_9HAM_036 | No text annotation | ||
| IL_9HAM_037 | No text annotation | ||
| IL_9HAM_038 | Tandem non-canonical cWW pairs | ||
| IL_9HAM_039 | tSH-tHW | ||
| IL_9HAM_040 | Single bulged U | ||
| IL_9HAM_041 | No text annotation | ||
| IL_9HAM_042 | No text annotation | ||
| IL_9HAM_043 | 180 degree turn | ||
| IL_9HAM_044 | Single bulged A | ||
| IL_9HAM_045 | UAA/GAN variation | ||
| IL_9HAM_046 | No text annotation | ||
| IL_9HAM_047 | Isolated tWW turn | ||
| IL_9HAM_048 | Decoding loop related | ||
| IL_9HAM_049 | No text annotation | ||
| IL_9HAM_050 | Intercalated tWH | ||
| IL_9HAM_051 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_9HAM_052 | No text annotation | ||
| IL_9HAM_053 | No text annotation | ||
| IL_9HAM_054 | No text annotation | ||
| IL_9HAM_055 | No text annotation | ||
| IL_9HAM_056 | C-loop | ||
| IL_9HAM_057 | UAA/GAN related, with intercalation | ||
| IL_9HAM_058 | Multiple bulged bases | ||
| IL_9HAM_059 | UAA/GAN with extra cWW | ||
| IL_9HAM_060 | Isolated near basepair | ||
| IL_9HAM_061 | Single bulged A | ||
| IL_9HAM_062 | No text annotation | ||
| IL_9HAM_063 | Major groove intercalation | ||
| IL_9HAM_064 | Multiple bulged bases with non-canonical cWW | ||
| IL_9HAM_065 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9HAM_001 | No text annotation | ||
| J3_9HAM_002 | No text annotation | ||
| J3_9HAM_003 | No text annotation | ||
| J3_9HAM_004 | No text annotation | ||
| J3_9HAM_005 | No text annotation | ||
| J3_9HAM_006 | No text annotation | ||
| J3_9HAM_007 | No text annotation | ||
| J3_9HAM_008 | No text annotation | ||
| J3_9HAM_009 | No text annotation | ||
| J4_9HAM_001 | No text annotation | ||
| J4_9HAM_002 | No text annotation | ||
| J4_9HAM_003 | No text annotation | ||
| J4_9HAM_004 | No text annotation | ||
| J4_9HAM_005 | No text annotation | ||
| J4_9HAM_006 | No text annotation | ||
| J4_9HAM_007 | No text annotation | ||
| J5_9HAM_001 | No text annotation | ||
| J5_9HAM_002 | No text annotation | ||
| J5_9HAM_003 | No text annotation | ||
| J5_9HAM_004 | No text annotation | ||
| J6_9HAM_001 | No text annotation | ||
| J7_9HAM_001 | No text annotation | ||
| J7_9HAM_002 | No text annotation |
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