Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_9HAM_001No text annotation
HL_9HAM_002No text annotation
HL_9HAM_003No text annotation
HL_9HAM_004No text annotation
HL_9HAM_005No text annotation
HL_9HAM_006No text annotation
HL_9HAM_007No text annotation
HL_9HAM_008No text annotation
HL_9HAM_009T-loop with 2 stacked bulged bases
HL_9HAM_010No text annotation
HL_9HAM_011T-loop with unstacked turn
HL_9HAM_012No text annotation
HL_9HAM_013Pseudoknot geometry
HL_9HAM_014GNRA
HL_9HAM_015GNRA
HL_9HAM_016No text annotation
HL_9HAM_017T-loop with 2 stacked bulged bases
HL_9HAM_018No text annotation
HL_9HAM_019No text annotation
HL_9HAM_020GNRA
HL_9HAM_021No text annotation
HL_9HAM_022GNRA
HL_9HAM_023No text annotation
HL_9HAM_024Externally structured
HL_9HAM_025GNRA
HL_9HAM_026T-loop with 2 stacked bulged bases
HL_9HAM_027Pseudoknot geometry with 3' bulge
HL_9HAM_028GNRA
HL_9HAM_029No text annotation
HL_9HAM_030Mini UNCG with extended bulge
HL_9HAM_031No text annotation
HL_9HAM_032UNCG
HL_9HAM_033Mini UNCG
HL_9HAM_034No text annotation
HL_9HAM_035GNRA
HL_9HAM_036No text annotation
HL_9HAM_037No text annotation
HL_9HAM_038No text annotation
HL_9HAM_039GNRA
HL_9HAM_040Ribsomal LSU H95
HL_9HAM_041No text annotation
HL_9HAM_042No text annotation
HL_9HAM_043No text annotation
HL_9HAM_044GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9HAM_0271/A/1011:1013,
1/A/1149:1150
Single bulged U
homologous
IL_5J7L_279
NA

Problematic loops

#loop idProblemSequence
IL_9HAM_001Triple sheared with non-canonical cWW
IL_9HAM_002Single bulged A
IL_9HAM_003Minor groove platform
IL_9HAM_004No text annotation
IL_9HAM_005No text annotation
IL_9HAM_0068x7 Sarcin-Ricin; G-bulge
IL_9HAM_007Single stack bend
IL_9HAM_008No text annotation
IL_9HAM_009No text annotation
IL_9HAM_010No text annotation
IL_9HAM_011No text annotation
IL_9HAM_012No text annotation
IL_9HAM_013Double sheared
IL_9HAM_014Isolated non-canonical cWW pair
IL_9HAM_015AAA cross-strand stack
IL_9HAM_016Single stack bend
IL_9HAM_017Isolated non-canonical cWW pair
IL_9HAM_018No text annotation
IL_9HAM_01990 degree turn
IL_9HAM_020No text annotation
IL_9HAM_021Stack outside cWW
IL_9HAM_022Single stack bend
IL_9HAM_0237x7 Sarcin-Ricin with intercalated A; G-bulge
IL_9HAM_024Single bulged C
IL_9HAM_025UAA/GAN
IL_9HAM_026SSU/LSU pseudoknot
IL_9HAM_028No text annotation
IL_9HAM_029Isolated cWS basepair
IL_9HAM_030No text annotation
IL_9HAM_031Kink-turn
IL_9HAM_0328x7 Sarcin-Ricin; G-bulge
IL_9HAM_033C-loop
IL_9HAM_034UAA/GAN
IL_9HAM_035tSH-tHW-tHS
IL_9HAM_036No text annotation
IL_9HAM_037No text annotation
IL_9HAM_038Tandem non-canonical cWW pairs
IL_9HAM_039tSH-tHW
IL_9HAM_040Single bulged U
IL_9HAM_041No text annotation
IL_9HAM_042No text annotation
IL_9HAM_043180 degree turn
IL_9HAM_044Single bulged A
IL_9HAM_045UAA/GAN variation
IL_9HAM_046No text annotation
IL_9HAM_047Isolated tWW turn
IL_9HAM_048Decoding loop related
IL_9HAM_049No text annotation
IL_9HAM_050Intercalated tWH
IL_9HAM_0516x5 Sarcin-Ricin; G-bulge
IL_9HAM_052No text annotation
IL_9HAM_053No text annotation
IL_9HAM_054No text annotation
IL_9HAM_055No text annotation
IL_9HAM_056C-loop
IL_9HAM_057UAA/GAN related, with intercalation
IL_9HAM_058Multiple bulged bases
IL_9HAM_059UAA/GAN with extra cWW
IL_9HAM_060Isolated near basepair
IL_9HAM_061Single bulged A
IL_9HAM_062No text annotation
IL_9HAM_063Major groove intercalation
IL_9HAM_064Multiple bulged bases with non-canonical cWW
IL_9HAM_065tHS double platform

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
J3_9HAM_001No text annotation
J3_9HAM_002No text annotation
J3_9HAM_003No text annotation
J3_9HAM_004No text annotation
J3_9HAM_005No text annotation
J3_9HAM_006No text annotation
J3_9HAM_007No text annotation
J3_9HAM_008No text annotation
J3_9HAM_009No text annotation
J4_9HAM_001No text annotation
J4_9HAM_002No text annotation
J4_9HAM_003No text annotation
J4_9HAM_004No text annotation
J4_9HAM_005No text annotation
J4_9HAM_006No text annotation
J4_9HAM_007No text annotation
J5_9HAM_001No text annotation
J5_9HAM_002No text annotation
J5_9HAM_003No text annotation
J5_9HAM_004No text annotation
J6_9HAM_001No text annotation
J7_9HAM_001No text annotation
J7_9HAM_002No text annotation

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