HL_9HAM_026
3D structure
- PDB id
- 9HAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C_(L29)-/(L22)- precursor supplemented with Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.06 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HAM_026 not in the Motif Atlas
- Homologous match to HL_4WF9_032
- Geometric discrepancy: 0.4309
- The information below is about HL_4WF9_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9HAM|1|A|G|1281
9HAM|1|A|U|1282
9HAM|1|A|G|1283
9HAM|1|A|A|1284
9HAM|1|A|A|1285
9HAM|1|A|A|1286
9HAM|1|A|A|1287
9HAM|1|A|G|1288
9HAM|1|A|C|1289
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein bL17
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