HL_9HAM_029

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9HAM|1|A|U|1396, 9HAM|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAM_029 not in the Motif Atlas

Homologous match to HL_9DFE_034

Geometric discrepancy: 0.3107

The information below is about HL_9DFE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9HAM|1|A|G|1389
9HAM|1|A|U|1390
9HAM|1|A|U|1391
9HAM|1|A|A|1392
9HAM|1|A|A|1393
9HAM|1|A|U|1394
9HAM|1|A|A|1395
9HAM|1|A|U|1396
9HAM|1|A|U|1397
9HAM|1|A|C|1398

Current chains

Chain A

23S ribosomal RNA

Nearby chains