HL_9HFM_012

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

9HFM|1|A|C|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFM_012 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.2581

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9HFM|1|A|G|1217
9HFM|1|A|A|1218
9HFM|1|A|U|1219
9HFM|1|A|A|1220
9HFM|1|A|A|1221
9HFM|1|A|A|1222
9HFM|1|A|C|1223
9HFM|1|A|C|1224
9HFM|1|A|C|1225
9HFM|1|A|C|1226

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain G

28S ribosomal protein S9, mitochondrial

Chain H

28S ribosomal protein S10, mitochondrial