HL_9HFM_016

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUGAAACUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFM_016 not in the Motif Atlas

Geometric match to HL_4YCP_003

Geometric discrepancy: 0.2337

The information below is about HL_4YCP_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9HFM|1|A|A|1399
9HFM|1|A|U|1400
9HFM|1|A|G|1401
9HFM|1|A|A|1402
9HFM|1|A|A|1403
9HFM|1|A|A|1404
9HFM|1|A|C|1405
9HFM|1|A|U|1406
9HFM|1|A|U|1407

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain K

28S ribosomal protein S14, mitochondrial

Chain Z

28S ribosomal protein S33, mitochondrial