HL_9HFO_001

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAAAUAA

Length

7 nucleotides

Bulged bases

9HFO|1|5|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFO_001 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.2908

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9HFO|1|5|U|13
9HFO|1|5|A|14
9HFO|1|5|A|15
9HFO|1|5|A|16
9HFO|1|5|U|20
9HFO|1|5|A|21
9HFO|1|5|A|22

Current chains

Chain 5

fMet-tRNAMet

Nearby chains