HL_9HLZ_007

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_007 not in the Motif Atlas

Homologous match to HL_7A0S_015

Geometric discrepancy: 0.1485

The information below is about HL_7A0S_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HLZ|1|AA|C|393
9HLZ|1|AA|G|394
9HLZ|1|AA|U|395
9HLZ|1|AA|A|396
9HLZ|1|AA|A|397
9HLZ|1|AA|G|398

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain DD

Large ribosomal subunit protein uL4m

Chain YY

Large ribosomal subunit protein bL34m