RNA 3D Hub //

9HLZ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9HLZ_0011/AA/153:158No text annotation
geometric
HL_9DFE_003
HL_82710.3
HL_9HLZ_0021/AA/234:241No text annotation
homologous
HL_7A0S_006
HL_48677.1
HL_9HLZ_0031/AA/265:270No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_9HLZ_0041/AA/286:292No text annotation
homologous
HL_7A0S_008
HL_76371.2
HL_9HLZ_0051/AA/324:332No text annotation
HL_9HLZ_0061/AA/347:355Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_9HLZ_0071/AA/393:398GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_9HLZ_0081/AA/441:448Mini UNCG with extended bulge
homologous
HL_7A0S_017
HL_90436.3
HL_9HLZ_0091/AA/465:474T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.3
HL_9HLZ_0101/AA/505:511No text annotation
HL_9HLZ_0111/AA/539:546GNRA wlth tandem sheared
geometric
HL_3HHN_010
HL_98423.3
HL_9HLZ_0121/AA/612:619No text annotation
HL_9HLZ_0131/AA/635:644No text annotation
homologous
HL_7A0S_022
HL_50204.1
HL_9HLZ_0141/AA/670:676No text annotation
geometric
HL_8B0X_054
HL_92935.1
HL_9HLZ_0151/AA/717:722No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_9HLZ_0161/AA/881:888GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_9HLZ_0171/AA/904:911No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_9HLZ_0191/AA/1254:1258Mini UNCG
geometric
HL_8DP3_002
HL_90436.3
HL_9HLZ_0201/AA/1313:1320No text annotation
HL_9HLZ_0211/AA/1343:1351No text annotation
HL_9HLZ_0221/AA/1384:1389No text annotation
geometric
HL_8B0X_062
HL_34789.4
HL_9HLZ_0231/AA/1564:1571No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_9HLZ_0241/AA/1581:1589Anticodon loop related
geometric
HL_4V9F_032
HL_87306.2
HL_9HLZ_0251/AA/1643:1649UNCG
homologous
HL_7A0S_042
HL_61337.3
HL_9HLZ_0261/AA/1684:1694No text annotation
geometric
HL_4WF9_043
HL_87681.1
HL_9HLZ_0271/AA/1713:1719No text annotation
HL_9HLZ_0281/AA/1773:1778GNRA
homologous
HL_7A0S_047
HL_34789.4
HL_9HLZ_0301/AA/1849:1857No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_9HLZ_0311/AA/1927:1936No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_9HLZ_0321/AA/2290:2302No text annotation
homologous
HL_7A0S_053
HL_02042.1
HL_9HLZ_0331/AA/2327:2332No text annotation
geometric
HL_7VTI_001
HL_89167.2
HL_9HLZ_0341/AA/2357:2363tRNA D-loop
geometric
HL_7UQ6_001
HL_20490.1
HL_9HLZ_0351/AA/2454:2462No text annotation
geometric
HL_8GLP_061
HL_02452.1
HL_9HLZ_0361/AA/2590:2597Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.2
HL_9HLZ_0371/AA/2622:2629GNRA with extra cWW
homologous
HL_7A0S_056
HL_87268.2
HL_9HLZ_0381/AA/2641:2646GNRA
homologous
HL_7A0S_057
HL_34789.4
HL_9HLZ_0391/AA/2671:2680No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_9HLZ_0401/AA/2737:2745No text annotation
homologous
HL_7A0S_059
HL_52011.1
HL_9HLZ_0411/AA/2794:2802GNRA variation
homologous
HL_7A0S_060
HL_46665.2
HL_9HLZ_0421/AA/2818:2824No text annotation
homologous
HL_7A0S_061
HL_48677.1
HL_9HLZ_0431/AA/2861:2866GNRA
homologous
HL_7A0S_062
HL_34789.4
HL_9HLZ_0441/AA/2925:2930GNRA
homologous
HL_7A0S_063
HL_34789.4
HL_9HLZ_0451/AA/3019:3026Pseudoknot geometry
geometric
HL_3HHN_009
HL_30680.5
HL_9HLZ_0461/AA/3081:3096No text annotation
homologous
HL_7A0S_065
HL_53269.2
HL_9HLZ_0471/AA/3135:3143No text annotation
HL_9HLZ_0481/r/19:29No text annotation
homologous
HL_6CZR_072
NA
HL_9HLZ_0501/r/152:160T-loop related
geometric
HL_3CUL_003
HL_87268.2
HL_9HLZ_0511/r/263:272GNRA related
homologous
HL_6CZR_077
NA
HL_9HLZ_0521/r/302:307GNRA
homologous
HL_6CZR_078
NA
HL_9HLZ_0531/r/327:337No text annotation
geometric
HL_8P9A_199
HL_86432.1
HL_9HLZ_0541/r/347:350No text annotation
geometric
HL_9E6Q_029
HL_32346.6
HL_9HLZ_0551/r/383:388GNRA
homologous
HL_6CZR_081
NA
HL_9HLZ_0561/r/491:498No text annotation
geometric
HL_9DFE_017
HL_99456.1
HL_9HLZ_0571/r/521:529No text annotation
HL_9HLZ_0581/r/636:641GNRA variation
homologous
HL_6CZR_216
NA
HL_9HLZ_0591/r/704:708Mini UNCG
geometric
HL_4V9F_021
HL_90436.3
HL_9HLZ_0601/r/748:773No text annotation
HL_9HLZ_0611/r/792:797GNRA
homologous
HL_6CZR_087
NA
HL_9HLZ_0621/r/851:861No text annotation
homologous
HL_6CZR_088
NA
HL_9HLZ_0631/r/928:933GNRA
homologous
HL_6CZR_090
NA
HL_9HLZ_0641/r/962:967GNRA
homologous
HL_6CZR_091
NA
HL_9HLZ_0651/r/1028:1037No text annotation
homologous
HL_6CZR_092
NA
HL_9HLZ_0661/r/1123:1128GNRA
homologous
HL_6CZR_095
NA
HL_9HLZ_0671/r/1136:1143T-loop related
homologous
HL_6CZR_096
NA
HL_9HLZ_0681/r/1171:1180No text annotation
HL_9HLZ_0691/r/1199:1202No text annotation
geometric
HL_8OI5_067
HL_90436.3
HL_9HLZ_0701/r/1301:1308Pseudoknot
geometric
HL_6UFG_003
HL_17440.1
HL_9HLZ_0711/r/1349:1354Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_9HLZ_0721/r/1382:1391T-loop with 3 stacked bulged bases
homologous
HL_6CZR_100
NA
HL_9HLZ_0731/r/1425:1435No text annotation
homologous
HL_6CZR_101
NA
HL_9HLZ_0741/r/1607:1612GNRA
homologous
HL_6CZR_103
NA
HL_9HLZ_0761/t/27:43No text annotation

Problematic loops

#loop idProblemSequence
HL_9HLZ_018No text annotation
HL_9HLZ_029No text annotation
HL_9HLZ_049No text annotation
HL_9HLZ_075No text annotation
HL_9HLZ_077T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9HLZ_0011/AA/22:24,
1/AA/3275:3277		No text annotation
geometric
IL_9E6Q_096
IL_01003.3
IL_9HLZ_0021/AA/25:32,
1/AA/3273:3274		No text annotation
IL_9HLZ_0031/AA/58:63,
1/AA/407:413		Triple sheared with non-canonical cWW
geometric
IL_7A0S_018
IL_29495.1
IL_9HLZ_0041/AA/96:97,
1/AA/378:380		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_9HLZ_0051/AA/113:121,
1/AA/140:145		No text annotation
IL_9HLZ_0071/AA/223:224,
1/AA/252:254		Single stack bend
homologous
IL_7A0S_005
IL_15011.2
IL_9HLZ_0081/AA/228:234,
1/AA/241:248		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.3
IL_9HLZ_0091/AA/279:285,
1/AA/293:298		No text annotation
geometric
IL_9E6Q_110
IL_02666.1
IL_9HLZ_0101/AA/433:436,
1/AA/453:456		No text annotation
IL_9HLZ_0111/AA/463:465,
1/AA/474:476		Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.3
IL_9HLZ_0121/AA/537:539,
1/AA/546:548		No text annotation
geometric
IL_8GLP_213
IL_10892.2
IL_9HLZ_0131/AA/581:583,
1/AA/697:699		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.3
IL_9HLZ_0141/AA/583:587,
1/AA/690:697		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.1
IL_9HLZ_0151/AA/606:607,
1/AA/654:656		Single bulged A
homologous
IL_7A0S_016
IL_14190.2
IL_9HLZ_0161/AA/611:612,
1/AA/619:621		Single bulged G
homologous
IL_7A0S_017
IL_28408.2
IL_9HLZ_0171/AA/629:632,
1/AA/647:649		Major groove platform with extra cWW
homologous
IL_7A0S_019
IL_36931.2
IL_9HLZ_0181/AA/666:669,
1/AA/677:682		No text annotation
IL_9HLZ_0191/AA/734:738,
1/AA/858:861		No text annotation
geometric
IL_6GYV_002
IL_15225.2
IL_9HLZ_0201/AA/734:740,
1/AA/855:861		No text annotation
IL_9HLZ_0211/AA/738:740,
1/AA/855:858		No text annotation
IL_9HLZ_0221/AA/780:785,
1/AA/841:846		No text annotation
geometric
IL_8GLP_291
IL_46203.1
IL_9HLZ_0231/AA/785:786,
1/AA/839:841		Minor groove platform
homologous
IL_7A0S_028
IL_34520.3
IL_9HLZ_0241/AA/787:791,
1/AA/835:838		C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_9HLZ_0251/AA/797:799,
1/AA/828:829		Single bulged A
geometric
IL_8P9A_288
IL_14190.2
IL_9HLZ_0281/AA/877:879,
1/AA/890:892		Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_01003.3
IL_9HLZ_0291/AA/919:922,
1/AA/1179:1181		No text annotation
geometric
IL_7SZU_003
IL_75527.2
IL_9HLZ_0301/AA/924:928,
1/AA/1173:1177		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_9HLZ_0311/AA/943:949,
1/AA/1106:1120		Kink-turn related
homologous
IL_7A0S_036
IL_57188.6
IL_9HLZ_0321/AA/950:957,
1/AA/1091:1105		No text annotation
IL_9HLZ_0331/AA/1230:1232,
1/AA/1280:1283		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9HLZ_0341/AA/1237:1244,
1/AA/1268:1275		No text annotation
IL_9HLZ_0351/AA/1295:1302,
1/AA/1911:1917		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.3
IL_9HLZ_0361/AA/1355:1362,
1/AA/1403:1409		No text annotation
IL_9HLZ_0371/AA/1364:1366,
1/AA/1400:1401		No text annotation
geometric
IL_8GLP_054
IL_15011.2
IL_9HLZ_0381/AA/1364:1368,
1/AA/1397:1401		No text annotation
geometric
IL_8B0X_111
IL_89021.4
IL_9HLZ_0391/AA/1366:1368,
1/AA/1397:1400		No text annotation
IL_9HLZ_0401/AA/1370:1372,
1/AA/1394:1395		Single bulged A
geometric
IL_8P9A_399
IL_14190.2
IL_9HLZ_0411/AA/1372:1374,
1/AA/1392:1394		Isolated non-canonical cWW pair
geometric
IL_4WF9_017
IL_71625.3
IL_9HLZ_0421/AA/1411:1413,
1/AA/1545:1549		No text annotation
IL_9HLZ_0431/AA/1425:1426,
1/AA/1527:1529		No text annotation
geometric
IL_8OI5_088
IL_15011.2
IL_9HLZ_0451/AA/1492:1493,
1/AA/1515:1521		No text annotation
IL_9HLZ_0461/AA/1603:1608,
1/AA/1904:1906		No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_9HLZ_0471/AA/1615:1617,
1/AA/1895:1897		Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_9HLZ_0481/AA/1618:1621,
1/AA/1893:1894		No text annotation
geometric
IL_9E6Q_063
IL_74641.2
IL_9HLZ_0491/AA/1618:1626,
1/AA/1890:1894		No text annotation
geometric
IL_4WF9_117
IL_80252.1
IL_9HLZ_0501/AA/1621:1626,
1/AA/1890:1893		Intercalated tWH
homologous
IL_7A0S_062
IL_28217.1
IL_9HLZ_0511/AA/1635:1636,
1/AA/1658:1668		No text annotation
IL_9HLZ_0521/AA/1638:1643,
1/AA/1649:1656		No text annotation
IL_9HLZ_0531/AA/1677:1678,
1/AA/1880:1882		Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_9HLZ_0541/AA/1705:1711,
1/AA/1721:1729		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9HLZ_0551/AA/1745:1748,
1/AA/1803:1804		Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_55206.1
IL_9HLZ_0561/AA/1749:1750,
1/AA/1799:1802		Major groove intercalation
homologous
IL_7A0S_067
IL_77710.1
IL_9HLZ_0571/AA/1755:1757,
1/AA/1793:1794		No text annotation
IL_9HLZ_0581/AA/1757:1766,
1/AA/1785:1793		No text annotation
IL_9HLZ_0591/AA/1833:1834,
1/AA/1864:1867		No text annotation
geometric
IL_8B0X_137
IL_24886.2
IL_9HLZ_0601/AA/1834:1845,
1/AA/1861:1864		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_9HLZ_0611/AA/1950:1952,
1/AA/2884:2885		Major groove platform
homologous
IL_7A0S_073
IL_48076.8
IL_9HLZ_0621/AA/1954:1956,
1/AA/2879:2882		No text annotation
geometric
IL_8B0X_140
IL_80025.1
IL_9HLZ_0631/AA/1967:1969,
1/AA/2708:2709		Single bulged U
homologous
IL_7A0S_075
IL_97561.3
IL_9HLZ_0641/AA/1970:1971,
1/AA/2704:2707		Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_9HLZ_0651/AA/1981:1983,
1/AA/2262:2265		Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.2
IL_9HLZ_0661/AA/1988:1991,
1/AA/2256:2257		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_9HLZ_0681/AA/2185:2187,
1/AA/2201:2203		Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.3
IL_9HLZ_0691/AA/2287:2288,
1/AA/2304:2306		No text annotation
geometric
IL_8OI5_019
IL_14190.2
IL_9HLZ_0701/AA/2437:2440,
1/AA/2608:2610		No text annotation
IL_9HLZ_0711/AA/2469:2472,
1/AA/2578:2580		No text annotation
geometric
IL_8B0X_006
IL_82096.1
IL_9HLZ_0721/AA/2617:2620,
1/AA/2631:2634		Double sheared
homologous
IL_7A0S_081
IL_58355.2
IL_9HLZ_0731/AA/2668:2670,
1/AA/2681:2682		Major groove platform
homologous
IL_7A0S_082
IL_48076.8
IL_9HLZ_0741/AA/2720:2721,
1/AA/2762:2764		Major groove platform
homologous
IL_7A0S_084
IL_48076.8
IL_9HLZ_0751/AA/2723:2725,
1/AA/2759:2760		Major groove platform
homologous
IL_7A0S_085
IL_48076.8
IL_9HLZ_0761/AA/2725:2727,
1/AA/2755:2759		Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.2
IL_9HLZ_0771/AA/2731:2736,
1/AA/2746:2751		No text annotation
IL_9HLZ_0781/AA/2773:2774,
1/AA/2847:2849		Major groove platform
homologous
IL_7A0S_088
IL_46637.2
IL_9HLZ_0791/AA/2776:2778,
1/AA/2841:2845		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.3
IL_9HLZ_0801/AA/2778:2779,
1/AA/2838:2841		Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.2
IL_9HLZ_0811/AA/2788:2789,
1/AA/2807:2810		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_9HLZ_0821/AA/2858:2859,
1/AA/2868:2870		Single bulged A
geometric
IL_7A0S_002
IL_14190.2
IL_9HLZ_0831/AA/2902:2906,
1/AA/3112:3116		No text annotation
geometric
IL_8GLP_096
IL_15190.2
IL_9HLZ_0841/AA/2919:2925,
1/AA/2930:2935		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_9HLZ_0851/AA/2947:2951,
1/AA/3061:3063		C-loop
homologous
IL_7A0S_095
IL_63596.12
IL_9HLZ_0861/AA/2954:2958,
1/AA/3054:3058		UAA/GAN variation
geometric
IL_4V9F_094
IL_45790.2
IL_9HLZ_0871/AA/2960:2962,
1/AA/3050:3052		Isolated cWH basepair
geometric
IL_8P9A_394
IL_10892.2
IL_9HLZ_0881/AA/2962:2963,
1/AA/3047:3050		Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.2
IL_9HLZ_0891/AA/3073:3078,
1/AA/3099:3104		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_9HLZ_0901/AA/3123:3126,
1/AA/3259:3260		Multiple bulged bases
geometric
IL_8P9A_363
IL_44609.2
IL_9HLZ_0911/AA/3158:3159,
1/AA/3246:3248		No text annotation
geometric
IL_9E6Q_101
IL_77710.1
IL_9HLZ_0921/AA/3163:3165,
1/AA/3240:3242		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_9HLZ_0931/AA/3165:3168,
1/AA/3237:3240		No text annotation
IL_9HLZ_0941/AA/3169:3173,
1/AA/3234:3236		No text annotation
IL_9HLZ_0951/r/37:39,
1/r/666:667		Single bulged G
homologous
IL_6CZR_113
NA
IL_9HLZ_0961/r/51:52,
1/r/400:402		Single bulged A
homologous
IL_6CZR_114
NA
IL_9HLZ_0971/r/54:59,
1/r/363:365		No text annotation
geometric
IL_8B0X_003
IL_32983.2
IL_9HLZ_0981/r/61:63,
1/r/360:361		Minor groove platform
homologous
IL_6CZR_116
NA
IL_9HLZ_0991/r/70:73,
1/r/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_9HLZ_1001/r/74:75,
1/r/99:102		Multiple bulged bases
geometric
IL_4YAZ_008
IL_71421.2
IL_9HLZ_1011/r/127:129,
1/r/238:239		Single bulged A
geometric
IL_6MSF_001
IL_14190.2
IL_9HLZ_1021/r/130:134,
1/r/235:237		No text annotation
geometric
IL_8B0X_009
IL_76400.1
IL_9HLZ_1031/r/134:138,
1/r/233:235		No text annotation
IL_9HLZ_1041/r/134:140,
1/r/232:235		No text annotation
IL_9HLZ_1051/r/138:140,
1/r/232:233		No text annotation
IL_9HLZ_1061/r/246:251,
1/r/282:289		Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_9HLZ_1071/r/253:256,
1/r/279:280		No text annotation
homologous
IL_6CZR_405
NA
IL_9HLZ_1081/r/297:299,
1/r/310:314		C-loop
homologous
IL_6CZR_125
NA
IL_9HLZ_1091/r/346:347,
1/r/350:352		Single bulged A
geometric
IL_3OXE_001
IL_14190.2
IL_9HLZ_1101/r/371:373,
1/r/396:397		Single bulged U
homologous
IL_6CZR_126
NA
IL_9HLZ_1111/r/375:379,
1/r/393:394		C-loop
homologous
IL_6CZR_127
NA
IL_9HLZ_1121/r/379:380,
1/r/391:393		Single bulged G
homologous
IL_6CZR_358
NA
IL_9HLZ_1131/r/517:521,
1/r/529:534		No text annotation
geometric
IL_8B0X_021
IL_82100.1
IL_9HLZ_1141/r/617:626,
1/r/653:655		No text annotation
IL_9HLZ_1151/r/629:635,
1/r/642:650		Kink-turn related
homologous
IL_6CZR_133
NA
IL_9HLZ_1161/r/674:676,
1/r/948:949		No text annotation
IL_9HLZ_1171/r/678:684,
1/r/945:946		No text annotation
homologous
IL_6CZR_134
NA
IL_9HLZ_1181/r/689:693,
1/r/822:826		tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_9HLZ_1191/r/693:695,
1/r/821:822		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_9HLZ_1201/r/717:718,
1/r/816:819		No text annotation
geometric
IL_8B0X_030
IL_74641.2
IL_9HLZ_1211/r/725:729,
1/r/807:809		No text annotation
IL_9HLZ_1221/r/739:742,
1/r/779:782		Tandem non-canonical cWW pairs
geometric
IL_8P9A_421
IL_15225.2
IL_9HLZ_1231/r/839:843,
1/r/869:870		Left turn
homologous
IL_6CZR_144
NA
IL_9HLZ_1241/r/844:848,
1/r/864:868		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_9HLZ_1251/r/951:959,
1/r/970:976		No text annotation
IL_9HLZ_1261/r/987:989,
1/r/1460:1463		Isolated non-canonical cWW with bulges
geometric
IL_4V9F_097
IL_68118.3
IL_9HLZ_1271/r/990:994,
1/r/1456:1459		Tandem non-canonical cWW pairs
geometric
IL_8P9A_355
IL_71194.2
IL_9HLZ_1281/r/1018:1019,
1/r/1258:1260		Minor groove platform
geometric
IL_5ML7_009
IL_34520.3
IL_9HLZ_1291/r/1058:1064,
1/r/1088:1092		No text annotation
IL_9HLZ_1301/r/1095:1097,
1/r/1240:1241		No text annotation
homologous
IL_6CZR_152
NA
IL_9HLZ_1311/r/1099:1102,
1/r/1237:1238		Multiple bulged bases
geometric
IL_3MXH_004
IL_71421.2
IL_9HLZ_1321/r/1104:1105,
1/r/1231:1235		Minor groove platform
homologous
IL_6CZR_155
NA
IL_9HLZ_1331/r/1107:1108,
1/r/1227:1229		Single bulged U
homologous
IL_6CZR_156
NA
IL_9HLZ_1351/r/1278:1287,
1/r/1324:1331		No text annotation
IL_9HLZ_1361/r/1289:1292,
1/r/1317:1322		No text annotation
IL_9HLZ_1371/r/1293:1297,
1/r/1312:1316		Triple sheared
geometric
IL_2A64_006
IL_15190.2
IL_9HLZ_1381/r/1347:1349,
1/r/1354:1356		Isolated non-canonical cWW pair
geometric
IL_5T3K_002
IL_71625.3
IL_9HLZ_1391/r/1371:1376,
1/r/1397:1402		No text annotation
homologous
IL_6CZR_164
NA
IL_9HLZ_1401/r/1419:1421,
1/r/1439:1440		Single bulged A
geometric
IL_1NBS_005
IL_14190.2
IL_9HLZ_1411/r/1467:1469,
1/r/1593:1596		No text annotation
homologous
IL_6CZR_165
NA
IL_9HLZ_1421/r/1469:1472,
1/r/1589:1593		No text annotation
homologous
IL_6CZR_368
NA
IL_9HLZ_1431/r/1473:1475,
1/r/1586:1588		Isolated non-canonical cWW pair
geometric
IL_5MWI_002
IL_01003.3
IL_9HLZ_1441/r/1475:1477,
1/r/1583:1586		No text annotation
geometric
IL_8OI5_066
IL_15698.5
IL_9HLZ_1451/r/1484:1487,
1/r/1573:1576		Double sheared
homologous
IL_6CZR_169
NA
IL_9HLZ_1461/r/1495:1497,
1/r/1564:1565		Single bulged A
geometric
IL_5WWT_001
IL_14190.2
IL_9HLZ_1471/r/1499:1503,
1/r/1559:1562		UAA/GAN variation
homologous
IL_6CZR_170
NA
IL_9HLZ_1481/r/1505:1508,
1/r/1554:1557		Tandem non-canonical cWW pairs
geometric
IL_4EYA_003
IL_71194.2
IL_9HLZ_1491/r/1510:1512,
1/r/1551:1552		No text annotation
geometric
IL_9AXU_087
IL_97561.3

Problematic loops

#loop idProblemSequence
IL_9HLZ_006Tandem non-canonical cWW pairs
IL_9HLZ_026Isolated non-canonical cWW pair
IL_9HLZ_027No text annotation
IL_9HLZ_044No text annotation
IL_9HLZ_067Single stack bend
IL_9HLZ_134No text annotation
IL_9HLZ_150Triple non-canonical cWW pairs
IL_9HLZ_151No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9HLZ_0011/AA/309:319,
1/AA/337:344,
1/AA/358:361		No text annotation
J3_9HLZ_0021/AA/592:598,
1/AA/664:666,
1/AA/682:685		No text annotation
geometric
J3_9DFE_007
J3_46658.1
J3_9HLZ_0031/AA/592:598,
1/AA/664:669,
1/AA/677:685		No text annotation
J3_9HLZ_0041/AA/607:609,
1/AA/623:627,
1/AA/651:654		No text annotation
homologous
J3_7A0S_005
J3_69816.1
J3_9HLZ_0051/AA/746:747,
1/AA/775:779,
1/AA/847:849		No text annotation
J3_9HLZ_0061/AA/961:962,
1/AA/1062:1068,
1/AA/1085:1087		No text annotation
J3_9HLZ_0071/AA/1329:1334,
1/AA/1577:1580,
1/AA/1590:1594		No text annotation
J3_9HLZ_0081/AA/1337:1340,
1/AA/1557:1563,
1/AA/1572:1574		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_9HLZ_0091/AA/1340:1354,
1/AA/1410:1411,
1/AA/1549:1557		No text annotation
J3_9HLZ_0101/AA/1426:1433,
1/AA/1489:1491,
1/AA/1522:1527		No text annotation
J3_9HLZ_0111/AA/1626:1635,
1/AA/1668:1672,
1/AA/1887:1890		No text annotation
J3_9HLZ_0121/AA/1626:1636,
1/AA/1658:1672,
1/AA/1887:1890		No text annotation
J3_9HLZ_0131/AA/1993:1995,
1/AA/2091:2095,
1/AA/2249:2254		No text annotation
J3_9HLZ_0141/AA/2309:2311,
1/AA/2651:2663,
1/AA/2687:2693		No text annotation
J3_9HLZ_0151/AA/2445:2447,
1/AA/2587:2589,
1/AA/2598:2603		No text annotation
homologous
J3_7A0S_010
J3_05327.1
J3_9HLZ_0161/AA/2447:2450,
1/AA/2466:2467,
1/AA/2582:2587		No text annotation
J3_9HLZ_0171/AA/2783:2786,
1/AA/2812:2814,
1/AA/2828:2834		No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_9HLZ_0181/AA/2971:2973,
1/AA/3013:3016,
1/AA/3029:3035		No text annotation
J3_9HLZ_0191/AA/3130:3131,
1/AA/3147:3156,
1/AA/3250:3255		No text annotation
J3_9HLZ_0201/r/53:54,
1/r/365:371,
1/r/397:399		No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_9HLZ_0211/r/53:59,
1/r/363:371,
1/r/397:399		No text annotation
homologous
J3_6CZR_058
NA
J3_9HLZ_0221/r/412:415,
1/r/487:490,
1/r/499:505		No text annotation
J3_9HLZ_0231/r/696:698,
1/r/714:717,
1/r/819:820		No text annotation
geometric
J3_1KUQ_001
J3_01633.1
J3_9HLZ_0241/r/696:698,
1/r/714:718,
1/r/816:820		No text annotation
homologous
J3_6CZR_077
NA
J3_9HLZ_0251/r/737:738,
1/r/783:791,
1/r/798:800		No text annotation
J3_9HLZ_0261/r/891:893,
1/r/924:927,
1/r/934:939		No text annotation
geometric
J3_4V9F_006
J3_76012.1
J3_9HLZ_0271/r/997:1004,
1/r/1412:1418,
1/r/1441:1453		No text annotation
J3_9HLZ_0281/r/1008:1011,
1/r/1267:1269,
1/r/1405:1408		No text annotation
homologous
J3_6CZR_019
NA
J3_9HLZ_0291/r/1020:1027,
1/r/1038:1049,
1/r/1253:1257		No text annotation
geometric
J3_4LFB_004
J3_88451.1
J3_9HLZ_0301/r/1055:1058,
1/r/1092:1094,
1/r/1242:1247		No text annotation
geometric
J3_8B0X_008
J3_84394.1
J3_9HLZ_0311/r/1055:1064,
1/r/1088:1094,
1/r/1242:1247		No text annotation
J3_9HLZ_0321/r/1110:1115,
1/r/1154:1160,
1/r/1219:1225		No text annotation
homologous
J3_6CZR_023
NA
J3_9HLZ_0331/r/1120:1121,
1/r/1130:1135,
1/r/1144:1149		No text annotation
J3_9HLZ_0341/r/1162:1164,
1/r/1187:1190,
1/r/1212:1217		No text annotation
J4_9HLZ_0011/AA/66:71,
1/AA/91:95,
1/AA/381:392,
1/AA/399:404		No text annotation
J4_9HLZ_0021/AA/930:937,
1/AA/1126:1127,
1/AA/1142:1144,
1/AA/1168:1171		No text annotation
J4_9HLZ_0031/AA/1303:1308,
1/AA/1325:1326,
1/AA/1597:1600,
1/AA/1909:1910		No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_9HLZ_0041/AA/1340:1343,
1/AA/1351:1354,
1/AA/1410:1411,
1/AA/1549:1557		No text annotation
J4_9HLZ_0051/AA/1679:1683,
1/AA/1695:1699,
1/AA/1735:1740,
1/AA/1873:1879		No text annotation
J4_9HLZ_0061/AA/1741:1743,
1/AA/1806:1807,
1/AA/1824:1833,
1/AA/1867:1872		No text annotation
J4_9HLZ_0071/AA/2910:2913,
1/AA/2941:2942,
1/AA/3068:3072,
1/AA/3105:3108		No text annotation
J4_9HLZ_0081/r/115:123,
1/r/243:244,
1/r/291:294,
1/r/317:318		No text annotation
homologous
J4_6CZR_027
NA
J4_9HLZ_0091/r/684:686,
1/r/829:834,
1/r/875:886,
1/r/944:945		No text annotation
homologous
J4_6CZR_013
NA
J4_9HLZ_0101/r/1269:1273,
1/r/1336:1343,
1/r/1360:1371,
1/r/1402:1405		No text annotation
J5_9HLZ_0011/AA/428:430,
1/AA/459:463,
1/AA/476:478,
1/AA/1294:1295,
1/AA/1917:1918		No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_9HLZ_0021/AA/483:488,
1/AA/577:580,
1/AA/700:703,
1/AA/1229:1230,
1/AA/1283:1289		No text annotation
J5_9HLZ_0031/AA/1974:1977,
1/AA/2269:2272,
1/AA/2284:2285,
1/AA/2308:2309,
1/AA/2693:2701		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_9HLZ_0041/r/43:46,
1/r/407:409,
1/r/508:512,
1/r/607:613,
1/r/659:662		No text annotation
J5_9HLZ_0051/r/65:68,
1/r/106:112,
1/r/321:322,
1/r/342:343,
1/r/355:358		No text annotation
J6_9HLZ_0011/AA/2312:2317,
1/AA/2375:2381,
1/AA/2421:2437,
1/AA/2610:2614,
1/AA/2637:2639,
1/AA/2648:2650		No text annotation
J7_9HLZ_0011/AA/43:49,
1/AA/422:428,
1/AA/1918:1923,
1/AA/1940:1943,
1/AA/2892:2898,
1/AA/3120:3123,
1/AA/3260:3262		No text annotation
J7_9HLZ_0021/AA/708:713,
1/AA/726:729,
1/AA/866:872,
1/AA/897:902,
1/AA/913:917,
1/AA/1183:1184,
1/AA/1219:1224		No text annotation

Problematic loops

#loop idProblemSequence
J4_9HLZ_011No text annotation

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