HL_9HLZ_008
3D structure
- PDB id
- 9HLZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUAUAUU
- Length
- 8 nucleotides
- Bulged bases
- 9HLZ|1|AA|U|442, 9HLZ|1|AA|U|443, 9HLZ|1|AA|U|447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HLZ_008 not in the Motif Atlas
- Homologous match to HL_7A0S_017
- Geometric discrepancy: 0.2686
- The information below is about HL_7A0S_017
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_90436.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
9HLZ|1|AA|A|441
9HLZ|1|AA|U|442
9HLZ|1|AA|U|443
9HLZ|1|AA|A|444
9HLZ|1|AA|U|445
9HLZ|1|AA|A|446
9HLZ|1|AA|U|447
9HLZ|1|AA|U|448
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain 44
- Large ribosomal subunit protein mL43
- Chain 55
- Large ribosomal subunit protein mL44
- Chain HH
- Large ribosomal subunit protein uL13m
- Chain NN
- Large ribosomal subunit protein bL21m
- Chain OO
- Large ribosomal subunit protein uL22m
Coloring options: