HL_9HLZ_009

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

9HLZ|1|AA|A|473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_009 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.1827

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9HLZ|1|AA|U|465
9HLZ|1|AA|U|466
9HLZ|1|AA|U|467
9HLZ|1|AA|U|468
9HLZ|1|AA|G|469
9HLZ|1|AA|U|470
9HLZ|1|AA|A|471
9HLZ|1|AA|U|472
9HLZ|1|AA|A|473
9HLZ|1|AA|A|474

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m

Chain WW

Large ribosomal subunit protein bL32m