HL_9HLZ_016

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUAAGG

Length

8 nucleotides

Bulged bases

9HLZ|1|AA|U|884, 9HLZ|1|AA|G|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_016 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.348

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HLZ|1|AA|C|881
9HLZ|1|AA|G|882
9HLZ|1|AA|A|883
9HLZ|1|AA|U|884
9HLZ|1|AA|A|885
9HLZ|1|AA|A|886
9HLZ|1|AA|G|887
9HLZ|1|AA|G|888

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain KK

Large ribosomal subunit protein uL16m

Chain RR

Large ribosomal subunit protein bL27m

Chain cc

Large ribosomal subunit protein mL60