HL_9HLZ_019

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUA

Length

5 nucleotides

Bulged bases

9HLZ|1|AA|A|1255, 9HLZ|1|AA|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_019 not in the Motif Atlas

Geometric match to HL_8DP3_002

Geometric discrepancy: 0.1433

The information below is about HL_8DP3_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9HLZ|1|AA|U|1254
9HLZ|1|AA|A|1255
9HLZ|1|AA|U|1256
9HLZ|1|AA|U|1257
9HLZ|1|AA|A|1258

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m