HL_9HLZ_022

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_022 not in the Motif Atlas

Geometric match to HL_8B0X_062

Geometric discrepancy: 0.1493

The information below is about HL_8B0X_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HLZ|1|AA|A|1384
9HLZ|1|AA|U|1385
9HLZ|1|AA|A|1386
9HLZ|1|AA|A|1387
9HLZ|1|AA|A|1388
9HLZ|1|AA|U|1389

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain SS

Large ribosomal subunit protein bL28m

Chain YY

Large ribosomal subunit protein bL34m