HL_9HLZ_023

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

9HLZ|1|AA|A|1566, 9HLZ|1|AA|U|1568, 9HLZ|1|AA|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_023 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1983

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HLZ|1|AA|C|1564
9HLZ|1|AA|G|1565
9HLZ|1|AA|A|1566
9HLZ|1|AA|C|1567
9HLZ|1|AA|U|1568
9HLZ|1|AA|C|1569
9HLZ|1|AA|A|1570
9HLZ|1|AA|G|1571

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain OO

Large ribosomal subunit protein uL22m

Chain YY

Large ribosomal subunit protein bL34m