HL_9HLZ_059

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAUU

Length

5 nucleotides

Bulged bases

9HLZ|1|r|U|705, 9HLZ|1|r|U|707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_059 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1094

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9HLZ|1|r|A|704
9HLZ|1|r|U|705
9HLZ|1|r|A|706
9HLZ|1|r|U|707
9HLZ|1|r|U|708

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8m

Chain Q

Small ribosomal subunit protein uS17m

Chain V

Small ribosomal subunit protein mS26