HL_9HLZ_065

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAUCCAC

Length

10 nucleotides

Bulged bases

9HLZ|1|r|A|1036

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_065 not in the Motif Atlas

Homologous match to HL_6CZR_092

Geometric discrepancy: 0.3271

The information below is about HL_6CZR_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9HLZ|1|r|G|1028
9HLZ|1|r|A|1029
9HLZ|1|r|U|1030
9HLZ|1|r|A|1031
9HLZ|1|r|A|1032
9HLZ|1|r|U|1033
9HLZ|1|r|C|1034
9HLZ|1|r|C|1035
9HLZ|1|r|A|1036
9HLZ|1|r|C|1037

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9m

Chain J

Small ribosomal subunit protein uS10m

Chain t

Transfer RNA; tRNA