HL_9HLZ_070

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUAAUU

Length

8 nucleotides

Bulged bases

9HLZ|1|r|U|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_070 not in the Motif Atlas

Geometric match to HL_6UFG_003

Geometric discrepancy: 0.3554

The information below is about HL_6UFG_003

Detailed Annotation

Pseudoknot

Broad Annotation

Pseudoknot

Motif group

HL_17440.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9HLZ|1|r|A|1301
9HLZ|1|r|U|1302
9HLZ|1|r|U|1303
9HLZ|1|r|U|1304
9HLZ|1|r|A|1305
9HLZ|1|r|A|1306
9HLZ|1|r|U|1307
9HLZ|1|r|U|1308

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13m

Chain W

Small ribosomal subunit protein mS29

Chain X

Small ribosomal subunit protein mS33