HL_9HLZ_071

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUUUU

Length

6 nucleotides

Bulged bases

9HLZ|1|r|U|1350, 9HLZ|1|r|U|1351, 9HLZ|1|r|U|1353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_071 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.1458

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

9HLZ|1|r|A|1349
9HLZ|1|r|U|1350
9HLZ|1|r|U|1351
9HLZ|1|r|U|1352
9HLZ|1|r|U|1353
9HLZ|1|r|U|1354

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain W

Small ribosomal subunit protein mS29