HL_9HLZ_077

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

9HLZ|1|t|A|59, 9HLZ|1|t|U|60

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HLZ_077 not in the Motif Atlas

Homologous match to HL_7K98_003

Geometric discrepancy: 0.3871

The information below is about HL_7K98_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9HLZ|1|t|G|53
9HLZ|1|t|U|54
9HLZ|1|t|U|55
9HLZ|1|t|C|56
9HLZ|1|t|A|57
9HLZ|1|t|A|58
9HLZ|1|t|A|59
9HLZ|1|t|U|60
9HLZ|1|t|C|61

Current chains

Chain t

E/E-site formyl-methionine tRNA

Nearby chains