HL_9HM0_001

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAAAC

Length

6 nucleotides

Bulged bases

9HM0|1|AA|A|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_001 not in the Motif Atlas

Geometric match to HL_9DFE_003

Geometric discrepancy: 0.1659

The information below is about HL_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9HM0|1|AA|G|153
9HM0|1|AA|U|154
9HM0|1|AA|A|155
9HM0|1|AA|A|156
9HM0|1|AA|A|157
9HM0|1|AA|C|158

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain PP

Large ribosomal subunit protein uL23m

Chain QQ

Large ribosomal subunit protein uL24m

Chain YY

Large ribosomal subunit protein bL34m