RNA 3D Hub //

9HM0 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9HM0_0011/AA/153:158No text annotation
geometric
HL_9DFE_003
HL_82710.3
HL_9HM0_0021/AA/234:241No text annotation
homologous
HL_7A0S_006
HL_48677.1
HL_9HM0_0031/AA/265:270No text annotation
homologous
HL_7A0S_007
HL_51020.2
HL_9HM0_0041/AA/286:292No text annotation
homologous
HL_7A0S_008
HL_76371.2
HL_9HM0_0051/AA/322:334No text annotation
HL_9HM0_0061/AA/347:355Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_9HM0_0071/AA/393:398GNRA
homologous
HL_7A0S_015
HL_34789.4
HL_9HM0_0081/AA/441:448Mini UNCG with extended bulge
homologous
HL_7A0S_017
HL_90436.3
HL_9HM0_0091/AA/465:474T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.3
HL_9HM0_0101/AA/505:511No text annotation
HL_9HM0_0111/AA/539:546GNRA wlth tandem sheared
geometric
HL_9DFE_020
HL_98423.3
HL_9HM0_0121/AA/612:619No text annotation
HL_9HM0_0131/AA/635:644No text annotation
homologous
HL_7A0S_022
HL_50204.1
HL_9HM0_0141/AA/670:676No text annotation
geometric
HL_8B0X_054
HL_92935.1
HL_9HM0_0151/AA/717:722No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_9HM0_0161/AA/881:888GNRA
homologous
HL_7A0S_026
HL_34789.4
HL_9HM0_0171/AA/904:911No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_9HM0_0191/AA/1254:1258Mini UNCG
geometric
HL_5AH5_007
HL_90436.3
HL_9HM0_0201/AA/1313:1320No text annotation
HL_9HM0_0211/AA/1343:1351No text annotation
HL_9HM0_0221/AA/1384:1389No text annotation
geometric
HL_8B0X_062
HL_34789.4
HL_9HM0_0231/AA/1564:1571No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_9HM0_0241/AA/1581:1589GNRA with extra cWW
geometric
HL_4WF9_039
HL_87268.2
HL_9HM0_0251/AA/1643:1649UNCG
homologous
HL_7A0S_042
HL_61337.4
HL_9HM0_0261/AA/1684:1694No text annotation
geometric
HL_8B0X_073
HL_87681.1
HL_9HM0_0271/AA/1713:1719No text annotation
HL_9HM0_0281/AA/1773:1778GNRA
homologous
HL_7A0S_047
HL_34789.4
HL_9HM0_0301/AA/1849:1857No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_9HM0_0311/AA/1927:1936No text annotation
homologous
HL_7A0S_049
HL_78372.1
HL_9HM0_0321/AA/2290:2302No text annotation
homologous
HL_7A0S_053
HL_02042.1
HL_9HM0_0331/AA/2327:2332tRNA D-loop
geometric
HL_4V9K_033
HL_20490.1
HL_9HM0_0341/AA/2357:2363tRNA D-loop
geometric
HL_7UQ6_001
HL_20490.1
HL_9HM0_0351/AA/2454:2462No text annotation
geometric
HL_8GLP_061
HL_02452.1
HL_9HM0_0361/AA/2590:2597Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.2
HL_9HM0_0371/AA/2622:2629GNRA with extra cWW
homologous
HL_7A0S_056
HL_87268.2
HL_9HM0_0381/AA/2641:2646GNRA
homologous
HL_7A0S_057
HL_34789.4
HL_9HM0_0391/AA/2671:2680No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_9HM0_0401/AA/2737:2745No text annotation
homologous
HL_7A0S_059
HL_52011.1
HL_9HM0_0411/AA/2794:2802GNRA variation
homologous
HL_7A0S_060
HL_46665.2
HL_9HM0_0421/AA/2818:2824No text annotation
homologous
HL_7A0S_061
HL_48677.1
HL_9HM0_0431/AA/2861:2866GNRA
homologous
HL_7A0S_062
HL_34789.4
HL_9HM0_0441/AA/2925:2930GNRA
homologous
HL_7A0S_063
HL_34789.4
HL_9HM0_0451/AA/3019:3026Pseudoknot geometry
geometric
HL_3HHN_009
HL_30680.5
HL_9HM0_0461/AA/3081:3096No text annotation
homologous
HL_7A0S_065
HL_53269.2
HL_9HM0_0471/AA/3135:3143No text annotation
HL_9HM0_0481/r/19:29No text annotation
homologous
HL_6CZR_072
NA
HL_9HM0_0501/r/152:160No text annotation
geometric
HL_8B0X_011
HL_98423.3
HL_9HM0_0511/r/262:273No text annotation
HL_9HM0_0521/r/302:307GNRA
homologous
HL_6CZR_078
NA
HL_9HM0_0531/r/327:337No text annotation
geometric
HL_8P9A_199
HL_86432.1
HL_9HM0_0541/r/347:350No text annotation
geometric
HL_8OI5_004
HL_32346.6
HL_9HM0_0551/r/383:388GNRA
homologous
HL_6CZR_081
NA
HL_9HM0_0561/r/491:498No text annotation
geometric
HL_9DFE_017
HL_99456.1
HL_9HM0_0571/r/521:529No text annotation
HL_9HM0_0581/r/636:641GNRA variation
homologous
HL_6CZR_216
NA
HL_9HM0_0591/r/703:709No text annotation
HL_9HM0_0601/r/748:773No text annotation
HL_9HM0_0611/r/792:797GNRA
homologous
HL_6CZR_087
NA
HL_9HM0_0621/r/850:862No text annotation
HL_9HM0_0631/r/928:933GNRA
homologous
HL_6CZR_090
NA
HL_9HM0_0641/r/962:967GNRA
homologous
HL_6CZR_091
NA
HL_9HM0_0651/r/1028:1037No text annotation
homologous
HL_6CZR_092
NA
HL_9HM0_0661/r/1123:1128GNRA
homologous
HL_6CZR_095
NA
HL_9HM0_0671/r/1136:1143T-loop related
homologous
HL_6CZR_096
NA
HL_9HM0_0681/r/1171:1180No text annotation
HL_9HM0_0691/r/1199:1202Mini UNCG
geometric
HL_8SP9_002
HL_12626.2
HL_9HM0_0701/r/1301:1308No text annotation
HL_9HM0_0711/r/1347:1356No text annotation
HL_9HM0_0721/r/1382:1391T-loop with 3 stacked bulged bases
homologous
HL_6CZR_100
NA
HL_9HM0_0731/r/1425:1435No text annotation
homologous
HL_6CZR_101
NA
HL_9HM0_0741/r/1607:1612GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_9HM0_018No text annotation
HL_9HM0_029No text annotation
HL_9HM0_049No text annotation
HL_9HM0_075No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9HM0_0021/AA/22:24,
1/AA/3275:3277		Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.4
IL_9HM0_0031/AA/25:32,
1/AA/3273:3274		No text annotation
IL_9HM0_0041/AA/58:63,
1/AA/407:413		Triple sheared with non-canonical cWW
geometric
IL_7A0S_018
IL_29495.1
IL_9HM0_0051/AA/96:97,
1/AA/378:380		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_9HM0_0061/AA/113:121,
1/AA/140:145		No text annotation
IL_9HM0_0071/AA/223:224,
1/AA/252:254		Single stack bend
homologous
IL_7A0S_005
IL_15011.3
IL_9HM0_0081/AA/228:234,
1/AA/241:248		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.3
IL_9HM0_0091/AA/279:285,
1/AA/293:298		No text annotation
geometric
IL_9E6Q_110
IL_02666.1
IL_9HM0_0101/AA/433:436,
1/AA/453:456		No text annotation
IL_9HM0_0111/AA/463:465,
1/AA/474:476		Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.3
IL_9HM0_0121/AA/537:539,
1/AA/546:548		No text annotation
geometric
IL_9AXU_019
IL_10892.2
IL_9HM0_0131/AA/581:583,
1/AA/697:699		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.4
IL_9HM0_0141/AA/583:587,
1/AA/690:697		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.1
IL_9HM0_0151/AA/606:607,
1/AA/654:656		Single bulged A
homologous
IL_7A0S_016
IL_14190.2
IL_9HM0_0161/AA/611:612,
1/AA/619:621		Single bulged G
homologous
IL_7A0S_017
IL_28408.2
IL_9HM0_0171/AA/629:632,
1/AA/647:649		Major groove platform with extra cWW
homologous
IL_7A0S_019
IL_36931.2
IL_9HM0_0181/AA/666:669,
1/AA/677:682		No text annotation
IL_9HM0_0191/AA/734:738,
1/AA/858:861		Tandem non-canonical cWW pairs
geometric
IL_8P9A_327
IL_15225.2
IL_9HM0_0201/AA/734:740,
1/AA/855:861		No text annotation
IL_9HM0_0211/AA/738:740,
1/AA/855:858		No text annotation
IL_9HM0_0221/AA/780:785,
1/AA/841:846		No text annotation
geometric
IL_8GLP_291
IL_46203.1
IL_9HM0_0231/AA/785:786,
1/AA/839:841		Minor groove platform
homologous
IL_7A0S_028
IL_34520.3
IL_9HM0_0241/AA/787:791,
1/AA/835:838		C-loop
homologous
IL_7A0S_029
IL_16301.1
IL_9HM0_0251/AA/797:799,
1/AA/828:829		No text annotation
geometric
IL_8GLP_154
IL_14190.2
IL_9HM0_0261/AA/877:879,
1/AA/890:892		Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_01003.4
IL_9HM0_0271/AA/919:922,
1/AA/1179:1181		No text annotation
geometric
IL_7SZU_003
IL_75527.2
IL_9HM0_0281/AA/924:928,
1/AA/1173:1177		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_9HM0_0291/AA/943:949,
1/AA/1106:1120		Kink-turn related
homologous
IL_7A0S_036
IL_57188.6
IL_9HM0_0301/AA/950:957,
1/AA/1091:1105		No text annotation
IL_9HM0_0311/AA/1230:1232,
1/AA/1280:1283		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_9HM0_0321/AA/1237:1244,
1/AA/1268:1275		No text annotation
IL_9HM0_0331/AA/1295:1302,
1/AA/1911:1917		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.3
IL_9HM0_0341/AA/1355:1362,
1/AA/1403:1409		No text annotation
IL_9HM0_0351/AA/1364:1368,
1/AA/1397:1401		UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_9HM0_0361/AA/1370:1372,
1/AA/1394:1395		No text annotation
geometric
IL_8GLP_154
IL_14190.2
IL_9HM0_0371/AA/1372:1374,
1/AA/1392:1394		Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.4
IL_9HM0_0381/AA/1411:1413,
1/AA/1545:1549		No text annotation
IL_9HM0_0391/AA/1426:1428,
1/AA/1525:1527		No text annotation
homologous
IL_7A0S_052
IL_38565.2
IL_9HM0_0411/AA/1492:1493,
1/AA/1515:1521		No text annotation
IL_9HM0_0421/AA/1603:1608,
1/AA/1904:1906		No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_9HM0_0431/AA/1615:1617,
1/AA/1895:1897		Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.1
IL_9HM0_0441/AA/1618:1621,
1/AA/1893:1894		No text annotation
geometric
IL_9E6Q_063
IL_74641.2
IL_9HM0_0451/AA/1618:1626,
1/AA/1890:1894		No text annotation
geometric
IL_8GLP_305
IL_80252.1
IL_9HM0_0461/AA/1621:1626,
1/AA/1890:1893		Intercalated tWH
homologous
IL_7A0S_062
IL_28217.1
IL_9HM0_0471/AA/1635:1636,
1/AA/1658:1668		No text annotation
IL_9HM0_0481/AA/1638:1643,
1/AA/1649:1656		No text annotation
IL_9HM0_0491/AA/1677:1678,
1/AA/1880:1882		Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_9HM0_0501/AA/1705:1711,
1/AA/1721:1729		Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9HM0_0511/AA/1745:1748,
1/AA/1803:1804		Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_55206.1
IL_9HM0_0521/AA/1749:1750,
1/AA/1799:1802		Major groove intercalation
homologous
IL_7A0S_067
IL_77710.1
IL_9HM0_0531/AA/1755:1764,
1/AA/1786:1794		No text annotation
IL_9HM0_0541/AA/1764:1768,
1/AA/1783:1786		No text annotation
IL_9HM0_0561/AA/1833:1834,
1/AA/1864:1867		No text annotation
geometric
IL_8B0X_137
IL_24886.2
IL_9HM0_0571/AA/1834:1845,
1/AA/1861:1864		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_9HM0_0581/AA/1950:1952,
1/AA/2884:2885		Major groove platform
homologous
IL_7A0S_073
IL_48076.8
IL_9HM0_0591/AA/1954:1956,
1/AA/2879:2882		No text annotation
geometric
IL_8B0X_140
IL_80025.1
IL_9HM0_0601/AA/1966:1970,
1/AA/2707:2710		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_15225.2
IL_9HM0_0611/AA/1970:1971,
1/AA/2704:2707		Minor groove platform
homologous
IL_7A0S_076
IL_34520.3
IL_9HM0_0621/AA/1981:1984,
1/AA/2261:2265		No text annotation
IL_9HM0_0631/AA/1988:1991,
1/AA/2256:2257		No text annotation
geometric
IL_8GLP_027
IL_71421.3
IL_9HM0_0651/AA/2186:2187,
1/AA/2201:2203		Single stack bend
geometric
IL_4C7O_002
IL_15011.3
IL_9HM0_0671/AA/2287:2288,
1/AA/2304:2306		No text annotation
geometric
IL_8OI5_019
IL_14190.2
IL_9HM0_0681/AA/2383:2386,
1/AA/2416:2419		No text annotation
geometric
IL_8BH9_001
IL_65740.1
IL_9HM0_0701/AA/2437:2440,
1/AA/2608:2610		No text annotation
IL_9HM0_0711/AA/2469:2472,
1/AA/2578:2580		No text annotation
geometric
IL_8B0X_006
IL_82096.1
IL_9HM0_0721/AA/2617:2620,
1/AA/2631:2634		Double sheared
homologous
IL_7A0S_081
IL_58355.2
IL_9HM0_0731/AA/2668:2670,
1/AA/2681:2682		Major groove platform
homologous
IL_7A0S_082
IL_48076.8
IL_9HM0_0741/AA/2720:2721,
1/AA/2762:2764		Major groove platform
homologous
IL_7A0S_084
IL_48076.8
IL_9HM0_0751/AA/2723:2725,
1/AA/2759:2760		Major groove platform
homologous
IL_7A0S_085
IL_48076.8
IL_9HM0_0761/AA/2725:2727,
1/AA/2755:2759		Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.2
IL_9HM0_0771/AA/2731:2737,
1/AA/2745:2751		No text annotation
IL_9HM0_0781/AA/2773:2774,
1/AA/2847:2849		Major groove platform
homologous
IL_7A0S_088
IL_46637.2
IL_9HM0_0791/AA/2776:2778,
1/AA/2841:2845		Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.4
IL_9HM0_0801/AA/2778:2779,
1/AA/2838:2841		Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.2
IL_9HM0_0811/AA/2788:2789,
1/AA/2807:2810		Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_9HM0_0821/AA/2858:2859,
1/AA/2868:2870		Single bulged A
geometric
IL_7A0S_002
IL_14190.2
IL_9HM0_0831/AA/2902:2906,
1/AA/3112:3116		Triple sheared
geometric
IL_9DFE_075
IL_15190.2
IL_9HM0_0841/AA/2919:2925,
1/AA/2930:2935		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_9HM0_0851/AA/2947:2951,
1/AA/3061:3063		C-loop
homologous
IL_7A0S_095
IL_63596.12
IL_9HM0_0861/AA/2954:2958,
1/AA/3054:3058		UAA/GAN variation
geometric
IL_4V9F_094
IL_45790.2
IL_9HM0_0871/AA/2960:2962,
1/AA/3050:3052		Isolated cWH basepair
geometric
IL_8P9A_394
IL_10892.2
IL_9HM0_0881/AA/2962:2963,
1/AA/3047:3050		Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.2
IL_9HM0_0891/AA/3016:3018,
1/AA/3027:3029		Isolated cWH basepair
geometric
IL_4KQ0_004
IL_10892.2
IL_9HM0_0901/AA/3073:3078,
1/AA/3099:3104		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_9HM0_0911/AA/3123:3126,
1/AA/3259:3260		No text annotation
geometric
IL_8ZAU_001
IL_05670.1
IL_9HM0_0921/AA/3158:3159,
1/AA/3246:3248		No text annotation
geometric
IL_8B0X_168
IL_77710.1
IL_9HM0_0931/AA/3162:3165,
1/AA/3240:3243		No text annotation
geometric
IL_4X4T_003
IL_65740.1
IL_9HM0_0941/AA/3165:3168,
1/AA/3237:3240		No text annotation
IL_9HM0_0951/AA/3169:3174,
1/AA/3233:3236		No text annotation
IL_9HM0_0961/r/37:39,
1/r/666:667		Single bulged G
homologous
IL_6CZR_113
NA
IL_9HM0_0971/r/51:52,
1/r/400:402		Single bulged A
homologous
IL_6CZR_114
NA
IL_9HM0_0981/r/54:59,
1/r/363:365		No text annotation
geometric
IL_8B0X_003
IL_32983.2
IL_9HM0_0991/r/61:63,
1/r/360:361		Minor groove platform
homologous
IL_6CZR_116
NA
IL_9HM0_1001/r/70:73,
1/r/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_9HM0_1011/r/74:75,
1/r/99:102		Multiple bulged bases
geometric
IL_4YAZ_007
IL_71421.3
IL_9HM0_1021/r/127:129,
1/r/238:239		Single bulged A
geometric
IL_8OI5_134
IL_14190.2
IL_9HM0_1031/r/130:134,
1/r/235:237		No text annotation
geometric
IL_8B0X_009
IL_76400.1
IL_9HM0_1041/r/134:138,
1/r/233:235		No text annotation
IL_9HM0_1051/r/134:140,
1/r/232:235		No text annotation
IL_9HM0_1061/r/138:140,
1/r/232:233		No text annotation
IL_9HM0_1071/r/246:251,
1/r/282:289		Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_9HM0_1081/r/253:256,
1/r/279:280		No text annotation
homologous
IL_6CZR_405
NA
IL_9HM0_1101/r/297:299,
1/r/310:314		C-loop
homologous
IL_6CZR_125
NA
IL_9HM0_1121/r/346:347,
1/r/350:352		No text annotation
geometric
IL_8OI5_031
IL_14190.2
IL_9HM0_1131/r/371:373,
1/r/396:397		Single bulged U
homologous
IL_6CZR_126
NA
IL_9HM0_1141/r/375:379,
1/r/393:394		C-loop
homologous
IL_6CZR_127
NA
IL_9HM0_1151/r/379:380,
1/r/391:393		Single bulged G
homologous
IL_6CZR_358
NA
IL_9HM0_1161/r/516:521,
1/r/529:535		No text annotation
IL_9HM0_1171/r/617:626,
1/r/653:655		No text annotation
IL_9HM0_1181/r/629:635,
1/r/642:650		Kink-turn related
homologous
IL_6CZR_133
NA
IL_9HM0_1191/r/674:676,
1/r/948:949		No text annotation
IL_9HM0_1201/r/678:684,
1/r/945:946		No text annotation
homologous
IL_6CZR_134
NA
IL_9HM0_1211/r/689:693,
1/r/822:826		tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_9HM0_1221/r/693:695,
1/r/821:822		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_9HM0_1231/r/717:718,
1/r/816:819		No text annotation
geometric
IL_8B0X_030
IL_74641.2
IL_9HM0_1251/r/739:742,
1/r/779:782		No text annotation
geometric
IL_8GLP_239
IL_15225.2
IL_9HM0_1261/r/743:745,
1/r/776:778		Isolated cWH basepair
geometric
IL_4KTG_002
IL_10892.2
IL_9HM0_1271/r/839:843,
1/r/869:870		Left turn
homologous
IL_6CZR_144
NA
IL_9HM0_1281/r/844:848,
1/r/864:868		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_9HM0_1291/r/951:960,
1/r/969:976		No text annotation
IL_9HM0_1301/r/987:989,
1/r/1460:1463		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.4
IL_9HM0_1311/r/990:994,
1/r/1456:1459		Tandem non-canonical cWW pairs
geometric
IL_8P9A_355
IL_71194.2
IL_9HM0_1321/r/1015:1019,
1/r/1258:1263		No text annotation
IL_9HM0_1331/r/1058:1061,
1/r/1091:1092		No text annotation
IL_9HM0_1341/r/1062:1064,
1/r/1088:1090		No text annotation
IL_9HM0_1361/r/1095:1097,
1/r/1240:1241		No text annotation
homologous
IL_6CZR_152
NA
IL_9HM0_1371/r/1097:1105,
1/r/1231:1240		No text annotation
IL_9HM0_1381/r/1107:1108,
1/r/1227:1229		Single bulged U
homologous
IL_6CZR_156
NA
IL_9HM0_1401/r/1273:1276,
1/r/1333:1336		No text annotation
geometric
IL_8BH9_001
IL_65740.1
IL_9HM0_1411/r/1276:1287,
1/r/1324:1333		No text annotation
IL_9HM0_1421/r/1288:1292,
1/r/1317:1323		No text annotation
IL_9HM0_1431/r/1292:1297,
1/r/1312:1317		No text annotation
geometric
IL_8P9A_254
IL_57885.2
IL_9HM0_1441/r/1298:1300,
1/r/1309:1311		Isolated cWH basepair
geometric
IL_8P9A_394
IL_10892.2
IL_9HM0_1451/r/1371:1376,
1/r/1397:1402		No text annotation
homologous
IL_6CZR_164
NA
IL_9HM0_1471/r/1419:1421,
1/r/1439:1440		Single bulged A
geometric
IL_1I9X_001
IL_14190.2
IL_9HM0_1481/r/1469:1477,
1/r/1583:1593		No text annotation
IL_9HM0_1491/r/1484:1487,
1/r/1573:1576		Double sheared
homologous
IL_6CZR_169
NA
IL_9HM0_1501/r/1494:1498,
1/r/1563:1566		No text annotation
IL_9HM0_1511/r/1499:1503,
1/r/1559:1562		UAA/GAN variation
homologous
IL_6CZR_170
NA
IL_9HM0_1521/r/1505:1509,
1/r/1553:1557		No text annotation

Problematic loops

#loop idProblemSequence
IL_9HM0_001No text annotation
IL_9HM0_040No text annotation
IL_9HM0_055No text annotation
IL_9HM0_064No text annotation
IL_9HM0_066No text annotation
IL_9HM0_069Single stack bend
IL_9HM0_109Isolated non-canonical cWW pair
IL_9HM0_111Tandem non-canonical cWW pairs
IL_9HM0_124Isolated cWH basepair
IL_9HM0_135Isolated cWH basepair
IL_9HM0_139Single bulged U
IL_9HM0_146Partly complementary
IL_9HM0_153No text annotation
IL_9HM0_154No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9HM0_0011/AA/309:319,
1/AA/337:344,
1/AA/358:361		No text annotation
J3_9HM0_0021/AA/592:598,
1/AA/664:666,
1/AA/682:685		No text annotation
geometric
J3_9DFE_007
J3_46658.1
J3_9HM0_0031/AA/592:598,
1/AA/664:669,
1/AA/677:685		No text annotation
J3_9HM0_0041/AA/607:609,
1/AA/623:627,
1/AA/651:654		No text annotation
homologous
J3_7A0S_005
J3_69816.1
J3_9HM0_0051/AA/746:747,
1/AA/775:779,
1/AA/847:849		No text annotation
J3_9HM0_0061/AA/961:962,
1/AA/1062:1068,
1/AA/1085:1087		No text annotation
J3_9HM0_0071/AA/1329:1334,
1/AA/1577:1580,
1/AA/1590:1594		No text annotation
J3_9HM0_0081/AA/1337:1340,
1/AA/1557:1563,
1/AA/1572:1574		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_9HM0_0091/AA/1340:1354,
1/AA/1410:1411,
1/AA/1549:1557		No text annotation
J3_9HM0_0101/AA/1428:1434,
1/AA/1488:1491,
1/AA/1522:1525		No text annotation
J3_9HM0_0111/AA/1626:1635,
1/AA/1668:1672,
1/AA/1887:1890		No text annotation
J3_9HM0_0121/AA/1626:1636,
1/AA/1658:1672,
1/AA/1887:1890		No text annotation
J3_9HM0_0131/AA/1993:1995,
1/AA/2091:2095,
1/AA/2249:2254		No text annotation
homologous
J3_7A0S_009
J3_17460.1
J3_9HM0_0141/AA/2309:2311,
1/AA/2651:2663,
1/AA/2687:2693		No text annotation
J3_9HM0_0151/AA/2445:2447,
1/AA/2587:2589,
1/AA/2598:2603		No text annotation
homologous
J3_7A0S_010
J3_05327.1
J3_9HM0_0161/AA/2447:2450,
1/AA/2466:2467,
1/AA/2582:2587		No text annotation
J3_9HM0_0171/AA/2783:2786,
1/AA/2812:2814,
1/AA/2828:2834		No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_9HM0_0181/AA/2971:2973,
1/AA/3013:3016,
1/AA/3029:3035		No text annotation
J3_9HM0_0191/AA/3130:3131,
1/AA/3147:3156,
1/AA/3250:3255		No text annotation
J3_9HM0_0201/r/53:54,
1/r/365:371,
1/r/397:399		No text annotation
geometric
J3_4LFB_010
J3_58657.1
J3_9HM0_0211/r/53:59,
1/r/363:371,
1/r/397:399		No text annotation
homologous
J3_6CZR_058
NA
J3_9HM0_0221/r/412:415,
1/r/487:490,
1/r/499:505		No text annotation
J3_9HM0_0231/r/696:698,
1/r/714:717,
1/r/819:820		No text annotation
geometric
J3_1KUQ_001
J3_01633.1
J3_9HM0_0241/r/696:698,
1/r/714:718,
1/r/816:820		No text annotation
homologous
J3_6CZR_077
NA
J3_9HM0_0251/r/737:738,
1/r/783:791,
1/r/798:800		No text annotation
J3_9HM0_0261/r/891:893,
1/r/924:927,
1/r/934:939		No text annotation
geometric
J3_9AXU_014
J3_76012.1
J3_9HM0_0271/r/997:1004,
1/r/1412:1418,
1/r/1441:1453		No text annotation
J3_9HM0_0281/r/1020:1027,
1/r/1038:1049,
1/r/1253:1257		No text annotation
geometric
J3_8CRE_080
J3_88451.1
J3_9HM0_0291/r/1055:1058,
1/r/1092:1094,
1/r/1242:1247		No text annotation
J3_9HM0_0301/r/1055:1061,
1/r/1091:1094,
1/r/1242:1247		No text annotation
J3_9HM0_0311/r/1109:1115,
1/r/1154:1160,
1/r/1219:1226		No text annotation
J3_9HM0_0321/r/1120:1121,
1/r/1130:1135,
1/r/1144:1149		No text annotation
J3_9HM0_0331/r/1162:1164,
1/r/1187:1190,
1/r/1212:1217		No text annotation
J4_9HM0_0011/AA/66:71,
1/AA/91:95,
1/AA/381:392,
1/AA/399:404		No text annotation
J4_9HM0_0021/AA/930:937,
1/AA/1126:1127,
1/AA/1142:1144,
1/AA/1168:1171		No text annotation
J4_9HM0_0031/AA/1303:1308,
1/AA/1325:1326,
1/AA/1597:1600,
1/AA/1909:1910		No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_9HM0_0041/AA/1340:1343,
1/AA/1351:1354,
1/AA/1410:1411,
1/AA/1549:1557		No text annotation
J4_9HM0_0051/AA/1679:1683,
1/AA/1695:1699,
1/AA/1735:1740,
1/AA/1873:1879		No text annotation
J4_9HM0_0061/AA/1741:1743,
1/AA/1806:1807,
1/AA/1824:1833,
1/AA/1867:1872		No text annotation
J4_9HM0_0071/AA/2910:2913,
1/AA/2941:2942,
1/AA/3068:3072,
1/AA/3105:3108		No text annotation
J4_9HM0_0081/r/115:123,
1/r/243:244,
1/r/291:294,
1/r/317:318		No text annotation
homologous
J4_6CZR_027
NA
J4_9HM0_0091/r/684:686,
1/r/829:834,
1/r/875:886,
1/r/944:945		No text annotation
homologous
J4_6CZR_013
NA
J5_9HM0_0011/AA/428:430,
1/AA/459:463,
1/AA/476:478,
1/AA/1294:1295,
1/AA/1917:1918		No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_9HM0_0021/AA/483:488,
1/AA/577:580,
1/AA/700:703,
1/AA/1229:1230,
1/AA/1283:1289		No text annotation
J5_9HM0_0031/AA/1974:1977,
1/AA/2269:2272,
1/AA/2284:2285,
1/AA/2308:2309,
1/AA/2693:2701		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_9HM0_0041/r/65:68,
1/r/106:112,
1/r/321:322,
1/r/342:343,
1/r/355:358		No text annotation
J5_9HM0_0051/r/1008:1011,
1/r/1267:1273,
1/r/1336:1343,
1/r/1360:1371,
1/r/1402:1408		No text annotation
J6_9HM0_0011/AA/2312:2317,
1/AA/2375:2381,
1/AA/2421:2437,
1/AA/2610:2614,
1/AA/2637:2639,
1/AA/2648:2650		No text annotation
J7_9HM0_0011/AA/43:49,
1/AA/422:428,
1/AA/1918:1923,
1/AA/1940:1943,
1/AA/2892:2898,
1/AA/3120:3123,
1/AA/3260:3262		No text annotation
J7_9HM0_0021/AA/708:713,
1/AA/726:729,
1/AA/866:872,
1/AA/897:902,
1/AA/913:917,
1/AA/1183:1184,
1/AA/1219:1224		No text annotation

Problematic loops

No problematic loops


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