HL_9HM0_008

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUAUAUU

Length

8 nucleotides

Bulged bases

9HM0|1|AA|U|442, 9HM0|1|AA|U|443, 9HM0|1|AA|U|447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_008 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.3038

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9HM0|1|AA|A|441
9HM0|1|AA|U|442
9HM0|1|AA|U|443
9HM0|1|AA|A|444
9HM0|1|AA|U|445
9HM0|1|AA|A|446
9HM0|1|AA|U|447
9HM0|1|AA|U|448

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain 55

Large ribosomal subunit protein mL44

Chain HH

Large ribosomal subunit protein uL13m

Chain NN

Large ribosomal subunit protein bL21m

Chain OO

Large ribosomal subunit protein uL22m