HL_9HM0_019

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUA

Length

5 nucleotides

Bulged bases

9HM0|1|AA|A|1255, 9HM0|1|AA|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_019 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.1489

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9HM0|1|AA|U|1254
9HM0|1|AA|A|1255
9HM0|1|AA|U|1256
9HM0|1|AA|U|1257
9HM0|1|AA|A|1258

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 44

Large ribosomal subunit protein mL43

Chain JJ

Large ribosomal subunit protein uL15m

Chain NN

Large ribosomal subunit protein bL21m