HL_9HM0_023

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

9HM0|1|AA|A|1566, 9HM0|1|AA|U|1568, 9HM0|1|AA|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_023 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1543

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9HM0|1|AA|C|1564
9HM0|1|AA|G|1565
9HM0|1|AA|A|1566
9HM0|1|AA|C|1567
9HM0|1|AA|U|1568
9HM0|1|AA|C|1569
9HM0|1|AA|A|1570
9HM0|1|AA|G|1571

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain OO

Large ribosomal subunit protein uL22m

Chain YY

Large ribosomal subunit protein bL34m