HL_9HM0_025

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAGUC

Length

7 nucleotides

Bulged bases

9HM0|1|AA|U|1645, 9HM0|1|AA|U|1648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_025 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.2999

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9HM0|1|AA|G|1643
9HM0|1|AA|U|1644
9HM0|1|AA|U|1645
9HM0|1|AA|A|1646
9HM0|1|AA|G|1647
9HM0|1|AA|U|1648
9HM0|1|AA|C|1649

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain BB

Large ribosomal subunit protein uL2m

Chain O

Small ribosomal subunit protein uS15m

Chain r

Small subunit ribosomal RNA; SSU rRNA