HL_9HM0_031

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9HM0|1|AA|A|1930, 9HM0|1|AA|A|1931, 9HM0|1|AA|G|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_031 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2303

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9HM0|1|AA|G|1927
9HM0|1|AA|U|1928
9HM0|1|AA|G|1929
9HM0|1|AA|A|1930
9HM0|1|AA|A|1931
9HM0|1|AA|G|1932
9HM0|1|AA|A|1933
9HM0|1|AA|U|1934
9HM0|1|AA|G|1935
9HM0|1|AA|C|1936

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL3m

Chain NN

Large ribosomal subunit protein bL21m

Chain cc

Large ribosomal subunit protein mL60