HL_9HM0_034

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUUAUA

Length

7 nucleotides

Bulged bases

9HM0|1|AA|U|2360, 9HM0|1|AA|A|2361, 9HM0|1|AA|U|2362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_034 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2367

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9HM0|1|AA|U|2357
9HM0|1|AA|A|2358
9HM0|1|AA|U|2359
9HM0|1|AA|U|2360
9HM0|1|AA|A|2361
9HM0|1|AA|U|2362
9HM0|1|AA|A|2363

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain RR

Large ribosomal subunit protein bL27m

Chain bb

Large ribosomal subunit protein mL59