HL_9HM0_038

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_038 not in the Motif Atlas

Homologous match to HL_7A0S_057

Geometric discrepancy: 0.1464

The information below is about HL_7A0S_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HM0|1|AA|C|2641
9HM0|1|AA|G|2642
9HM0|1|AA|U|2643
9HM0|1|AA|A|2644
9HM0|1|AA|A|2645
9HM0|1|AA|G|2646

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 11

Large ribosomal subunit protein mL38

Chain EE

Large ribosomal subunit protein uL5m

Chain bb

Large ribosomal subunit protein mL59