HL_9HM0_052
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HM0_052 not in the Motif Atlas
- Homologous match to HL_6CZR_078
- Geometric discrepancy: 0.2245
- The information below is about HL_6CZR_078
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.6
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
9HM0|1|r|U|302
9HM0|1|r|G|303
9HM0|1|r|A|304
9HM0|1|r|A|305
9HM0|1|r|A|306
9HM0|1|r|G|307
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain 6
- Small ribosomal subunit protein mS45
- Chain D
- Small ribosomal subunit protein uS4m
- Chain E
- Small ribosomal subunit protein uS5m
- Chain H
- Small ribosomal subunit protein uS8m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain Q
- Small ribosomal subunit protein uS17m
- Chain V
- Small ribosomal subunit protein mS26
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