HL_9HM0_056
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAUUAAA
- Length
- 8 nucleotides
- Bulged bases
- 9HM0|1|r|U|495, 9HM0|1|r|A|496
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HM0_056 not in the Motif Atlas
- Geometric match to HL_9DFE_017
- Geometric discrepancy: 0.3522
- The information below is about HL_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99456.1
- Basepair signature
- cWW-tSS-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|U|491
9HM0|1|r|G|492
9HM0|1|r|A|493
9HM0|1|r|U|494
9HM0|1|r|U|495
9HM0|1|r|A|496
9HM0|1|r|A|497
9HM0|1|r|A|498
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain 6
- Small ribosomal subunit protein mS45
- Chain C
- Small ribosomal subunit protein uS3m
- Chain D
- Small ribosomal subunit protein uS4m
- Chain Y
- Small ribosomal subunit protein mS35
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