HL_9HM0_058

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM0_058 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.2436

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9HM0|1|r|C|636
9HM0|1|r|A|637
9HM0|1|r|G|638
9HM0|1|r|U|639
9HM0|1|r|C|640
9HM0|1|r|G|641

Current chains

Chain r

15S mitochondrial rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12m